| METHOD about: | ../../doc/explain_methods.html#PX_about_profsec |
| METHOD url: | PROFsec |
| METHOD quote: | B Rost:: unpublished. |
| TYPE : | sec |
| NPROT : | 1554 |
| NWEEKS : | 107 |
| AVE_Q3 : | 76.7 |
| AVE_SOV: | 73.0 |
| NOTE 1 : | here ALL results obtained for profsec are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2002_10_07 | dssp | psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
| sec | 2002_10_07 | dssp | sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
| sec | 2002_10_07 | dssp | errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | profsec | ALL | 1554 | 76.7 | |
| sec | profsec | 2000_04 | 10 | 78.8 | old/2000_04_profsec.html |
| sec | profsec | 2000_05 | 15 | 74.9 | old/2000_05_profsec.html |
| sec | profsec | 2000_06 | 10 | 78.7 | old/2000_06_profsec.html |
| sec | profsec | 2000_07 | 28 | 77.3 | old/2000_07_profsec.html |
| sec | profsec | 2000_08 | 18 | 78.7 | old/2000_08_profsec.html |
| sec | profsec | 2000_09 | 24 | 78.4 | old/2000_09_profsec.html |
| sec | profsec | 2000_10 | 23 | 75.4 | old/2000_10_profsec.html |
| sec | profsec | 2000_11 | 31 | 76.4 | old/2000_11_profsec.html |
| sec | profsec | 2000_12 | 31 | 79.3 | old/2000_12_profsec.html |
| sec | profsec | 2001_01 | 17 | 78.7 | old/2001_01_profsec.html |
| sec | profsec | 2001_02 | 29 | 74.2 | old/2001_02_profsec.html |
| sec | profsec | 2001_03 | 36 | 73.7 | old/2001_03_profsec.html |
| sec | profsec | 2001_04 | 11 | 74.5 | old/2001_04_profsec.html |
| sec | profsec | 2001_05 | 12 | 70.4 | old/2001_05_profsec.html |
| sec | profsec | 2001_06 | 16 | 73.4 | old/2001_06_profsec.html |
| sec | profsec | 2001_07 | 19 | 80.3 | old/2001_07_profsec.html |
| sec | profsec | 2001_08 | 47 | 75.0 | old/2001_08_profsec.html |
| sec | profsec | 2001_09 | 26 | 78.0 | old/2001_09_profsec.html |
| sec | profsec | 2001_10 | 7 | 64.4 | old/2001_10_profsec.html |
| sec | profsec | 2001_11 | 15 | 78.9 | old/2001_11_profsec.html |
| sec | profsec | 2001_12 | 147 | 78.0 | old/2001_12_profsec.html |
| sec | profsec | 2002_01 | 37 | 77.0 | old/2002_01_profsec.html |
| sec | profsec | 2002_02 | 30 | 73.0 | old/2002_02_profsec.html |
| sec | profsec | 2002_03 | 27 | 77.3 | old/2002_03_profsec.html |
| sec | profsec | 2002_04 | 23 | 76.5 | old/2002_04_profsec.html |
| sec | profsec | 2002_05 | 39 | 73.3 | old/2002_05_profsec.html |
| sec | profsec | 2002_06 | 21 | 72.4 | old/2002_06_profsec.html |
| sec | profsec | 2002_07 | 23 | 80.1 | old/2002_07_profsec.html |
| sec | profsec | ALL | 1554 | 76.7 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |