METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2002_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_06 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2002_06 | dssp | THIS_month:psum | 72.4 | 60 | 63 | 49 | 50 | 72 | 70 | 68.9 | 69.5 | 71.6 | 64.9 | 4.1 | 0.35 | 0.35 | 0.35 | 0.70 | 0.62 | 0.51 | 95 | 7.9 | 6.6 |
sec | 2002_06 | dssp | 1gr8:A | 79.4 | 80 | 92 | 55 | 76 | 88 | 70 | 72.2 | 82 | 65 | 64 | 0.7 | 0.43 | 0.42 | 0.45 | 0.77 | 0.59 | 0.61 | 100.0 | 5.0 | 4.0 |
sec | 2002_06 | dssp | 1gty:A | 82.5 | 0 | 0 | 80 | 84 | 84 | 80 | 81.4 | 100 | 80 | 82 | 0.0 | 0.33 | 0.33 | 0.33 | 1.0 | 0.65 | 0.65 | 100.0 | 0.00 | 2.0 |
sec | 2002_06 | dssp | 1gw5:B | 77.4 | 87 | 79 | 0 | 0 | 60 | 72 | 76.1 | 87 | 100 | 58 | 0.0 | 0.19 | 0.19 | 0.20 | 0.49 | 1.0 | 0.49 | 100.0 | 6.0 | 0.00 |
sec | 2002_06 | dssp | 1gw5:S | 93.0 | 98 | 91 | 91 | 94 | 85 | 94 | 90.7 | 89 | 92 | 90 | 1.4 | 0.73 | 0.73 | 0.74 | 0.90 | 0.90 | 0.85 | 100.0 | 3.0 | 0.00 |
sec | 2002_06 | dssp | 1jy4:A | 51.4 | 0 | 0 | 50 | 80 | 54 | 60 | 56.9 | 100 | 56 | 59 | 22.8 | 0.09 | 0.12 | 0.07 | 1.0 | 0.21 | 0.38 | 100.0 | 28.0 | 25.0 |
sec | 2002_06 | dssp | 1k8v:A | 84.6 | 94 | 88 | 0 | 0 | 77 | 94 | 70.2 | 100 | 100 | 57 | 0.0 | 0.54 | 0.62 | 0.47 | 0.84 | 1.0 | 0.71 | 100.0 | 2.0 | 7.0 |
sec | 2002_06 | dssp | 1kmd:A | 83.8 | 88 | 86 | 100 | 66 | 76 | 90 | 76.4 | 75 | 55 | 82 | 0.0 | 0.55 | 0.57 | 0.54 | 0.79 | 0.78 | 0.68 | 100.0 | 0.00 | 6.0 |
sec | 2002_06 | dssp | 1kw4:A | 84.3 | 84 | 90 | 0 | 0 | 83 | 74 | 90.1 | 93 | 100 | 83 | 0.0 | 0.35 | 0.36 | 0.35 | 0.66 | 1.0 | 0.66 | 100.0 | 4.0 | 0.00 |
sec | 2002_06 | dssp | 1l1o:C | 86.1 | 93 | 90 | 87 | 85 | 78 | 82 | 82.9 | 100 | 77 | 74 | 0.5 | 0.58 | 0.59 | 0.59 | 0.88 | 0.78 | 0.70 | 100.0 | 1.0 | 0.00 |
sec | 2002_06 | dssp | 1l2p:A | 98.4 | 98 | 100 | 0 | 0 | 100 | 75 | 99.2 | 100 | 100 | 83 | 0.0 | 0.73 | 0.81 | 0.66 | 0.85 | 1.0 | 0.85 | 100.0 | 1.0 | 0.00 |
sec | 2002_06 | dssp | 1l2r:A | 64.8 | 63 | 86 | 38 | 30 | 75 | 63 | 58.5 | 63 | 34 | 60 | 7.8 | 0.20 | 0.20 | 0.20 | 0.58 | 0.21 | 0.45 | 100.0 | 12.0 | 4.0 |
sec | 2002_06 | dssp | 1l2w:I | 57.9 | 94 | 50 | 27 | 60 | 48 | 70 | 59.2 | 77 | 22 | 62 | 5.2 | 0.18 | 0.17 | 0.20 | 0.49 | 0.31 | 0.28 | 100.0 | 26.0 | 10.0 |
sec | 2002_06 | dssp | 1l3a:C | 73.1 | 71 | 77 | 72 | 77 | 74 | 67 | 68.7 | 61 | 81 | 62 | 3.2 | 0.31 | 0.31 | 0.32 | 0.67 | 0.58 | 0.51 | 100.0 | 1.0 | 2.0 |
sec | 2002_06 | dssp | 1l6p:A | 70.2 | 0 | 0 | 72 | 79 | 78 | 59 | 55.2 | 0 | 57 | 58 | 4.1 | 0.15 | 0.14 | 0.17 | 1.0 | 0.42 | 0.48 | 0.0 | 5.0 | 4.0 |
sec | 2002_06 | dssp | 1l8r:A | 74.3 | 72 | 86 | 87 | 75 | 67 | 62 | 82.6 | 90 | 95 | 64 | 0.9 | 0.39 | 0.40 | 0.39 | 0.65 | 0.74 | 0.45 | 100.0 | 6.0 | 3.0 |
sec | 2002_06 | dssp | 1lf7:A | 78.6 | 37 | 100 | 93 | 82 | 84 | 72 | 80.0 | 50 | 100 | 76 | 0.0 | 0.50 | 0.46 | 0.54 | 0.57 | 0.80 | 0.57 | 100.0 | 11.0 | 4.0 |
sec | 2002_06 | dssp | 1ln1:A | 82.8 | 83 | 80 | 84 | 94 | 80 | 72 | 77.2 | 63 | 85 | 75 | 0.0 | 0.54 | 0.54 | 0.54 | 0.76 | 0.82 | 0.62 | 100.0 | 0.00 | 4.0 |
sec | 2002_06 | dssp | 1ls7:A | 64.0 | 64 | 75 | 0 | 0 | 62 | 52 | 55.7 | 61 | 100 | 48 | 0.0 | 0.08 | 0.09 | 0.08 | 0.30 | 1.0 | 0.26 | 100.0 | 8.0 | 1.0 |
sec | 2002_06 | dssp | 1lub:A | 28.0 | 0 | 0 | 0 | 0 | 53 | 53 | 12.4 | 0 | 0 | 19 | 24.0 | 0.12 | 0.11 | 0.15 | 1.0 | -0.35 | 0.03 | 100.0 | 36.0 | 36.0 |
sec | 2002_06 | dssp | 1luo:A | 33.9 | 0 | 0 | 44 | 25 | 37 | 54 | 34.1 | 0 | 34 | 42 | 12.7 | 0.02 | 0.02 | 0.02 | -0.14 | -0.07 | -0.03 | 100.0 | 3.0 | 21.0 |
sec | 2002_06 | dssp | THIS_month:psum | 72.4 | 60 | 63 | 49 | 50 | 72 | 70 | 68.9 | 69.5 | 71.6 | 64.9 | 4.1 | 0.35 | 0.35 | 0.35 | 0.70 | 0.62 | 0.51 | 95 | 7.9 | 6.6 |
sec | 2002_06 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |