METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2001_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_09 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2001_09 | dssp | THIS_month:psum | 78.0 | 66 | 74 | 64 | 72 | 78 | 71 | 78.8 | 70.9 | 79.6 | 71.7 | 1.3 | 0.39 | 0.38 | 0.40 | 0.67 | 0.68 | 0.57 | 84 | 4.9 | 4.1 |
sec | 2001_09 | dssp | 1e8c:A | 82.2 | 88 | 85 | 76 | 84 | 79 | 78 | 82.1 | 89 | 83 | 75 | 0.0 | 0.51 | 0.51 | 0.51 | 0.80 | 0.75 | 0.63 | 100.0 | 1.0 | 2.0 |
sec | 2001_09 | dssp | 1e8p:A | 71.7 | 0 | 0 | 83 | 75 | 85 | 69 | 75.0 | 0 | 100 | 78 | 4.3 | 0.28 | 0.23 | 0.34 | 1.0 | 0.64 | 0.53 | 100.0 | 15.0 | 4.0 |
sec | 2001_09 | dssp | 1e8q:A | 71.7 | 0 | 0 | 83 | 75 | 81 | 69 | 75.0 | 0 | 100 | 75 | 2.1 | 0.27 | 0.23 | 0.33 | 1.0 | 0.64 | 0.48 | 100.0 | 13.0 | 4.0 |
sec | 2001_09 | dssp | 1fex:A | 69.5 | 77 | 77 | 0 | 0 | 60 | 77 | 75.5 | 87 | 100 | 65 | 3.3 | 0.18 | 0.21 | 0.16 | 0.52 | 1.0 | 0.46 | 100.0 | 0.00 | 10.0 |
sec | 2001_09 | dssp | 1gd7:A | 69.7 | 21 | 100 | 82 | 70 | 71 | 67 | 63.2 | 28 | 81 | 56 | 1.8 | 0.25 | 0.22 | 0.28 | 0.43 | 0.56 | 0.42 | 0.0 | 10.0 | 7.0 |
sec | 2001_09 | dssp | 1gd8:A | 82.9 | 95 | 89 | 52 | 91 | 79 | 65 | 87.9 | 93 | 77 | 84 | 2.8 | 0.48 | 0.46 | 0.50 | 0.80 | 0.64 | 0.62 | 100.0 | 3.0 | 8.0 |
sec | 2001_09 | dssp | 1h6k:A | 81.2 | 84 | 89 | 25 | 10 | 76 | 73 | 80.3 | 88 | 12 | 69 | 1.8 | 0.30 | 0.33 | 0.29 | 0.65 | 0.13 | 0.62 | 100.0 | 3.0 | 2.0 |
sec | 2001_09 | dssp | 1h8b:B | 91.3 | 94 | 94 | 0 | 0 | 83 | 83 | 97.8 | 100 | 100 | 91 | 0.0 | 0.50 | 0.51 | 0.51 | 0.77 | 1.0 | 0.77 | 100.0 | 0.00 | 0.00 |
sec | 2001_09 | dssp | 1hfo:A | 71.7 | 59 | 92 | 82 | 78 | 76 | 54 | 69.2 | 72 | 81 | 52 | 1.7 | 0.37 | 0.38 | 0.38 | 0.63 | 0.71 | 0.45 | 0.0 | 14.0 | 1.0 |
sec | 2001_09 | dssp | 1hze:A | 75.3 | 30 | 44 | 80 | 87 | 83 | 71 | 80.7 | 46 | 95 | 76 | 3.0 | 0.35 | 0.35 | 0.37 | 0.29 | 0.72 | 0.57 | 100.0 | 4.0 | 3.0 |
sec | 2001_09 | dssp | 1i18:A | 79.4 | 44 | 44 | 79 | 89 | 86 | 77 | 86.5 | 66 | 93 | 83 | 3.0 | 0.38 | 0.38 | 0.39 | 0.38 | 0.73 | 0.65 | 100.0 | 0.00 | 5.0 |
sec | 2001_09 | dssp | 1i9g:A | 82.6 | 84 | 93 | 82 | 78 | 81 | 79 | 84.0 | 89 | 90 | 77 | 0.3 | 0.52 | 0.52 | 0.53 | 0.85 | 0.71 | 0.65 | 100.0 | 2.0 | 1.0 |
sec | 2001_09 | dssp | 1iqp:A | 81.3 | 85 | 87 | 75 | 92 | 73 | 66 | 80.5 | 88 | 84 | 62 | 0.9 | 0.40 | 0.40 | 0.41 | 0.64 | 0.81 | 0.57 | 100.0 | 1.0 | 1.0 |
sec | 2001_09 | dssp | 1j75:A | 82.5 | 90 | 100 | 36 | 100 | 100 | 56 | 81.6 | 100 | 45 | 65 | 0.0 | 0.63 | 0.60 | 0.66 | 0.89 | 0.56 | 0.66 | 100.0 | 5.0 | 12.0 |
sec | 2001_09 | dssp | 1j7v:R | 81.0 | 27 | 100 | 83 | 79 | 84 | 81 | 76.0 | 36 | 75 | 80 | 1.9 | 0.35 | 0.33 | 0.37 | 0.51 | 0.65 | 0.65 | 0.0 | 3.0 | 2.0 |
sec | 2001_09 | dssp | 1jce:A | 73.6 | 81 | 80 | 61 | 86 | 74 | 59 | 74.5 | 80 | 72 | 69 | 2.7 | 0.35 | 0.35 | 0.36 | 0.68 | 0.65 | 0.48 | 0.0 | 0.00 | 8.0 |
sec | 2001_09 | dssp | 1jcg:A | 72.8 | 82 | 76 | 63 | 85 | 69 | 61 | 75.1 | 81 | 74 | 68 | 2.6 | 0.34 | 0.34 | 0.35 | 0.65 | 0.65 | 0.46 | 100.0 | 3.0 | 7.0 |
sec | 2001_09 | dssp | 1jma:A | 71.4 | 52 | 66 | 58 | 80 | 84 | 69 | 57.2 | 54 | 69 | 51 | 0.3 | 0.27 | 0.26 | 0.29 | 0.52 | 0.57 | 0.43 | 100.0 | 3.0 | 8.0 |
sec | 2001_09 | dssp | 1jmt:A | 76.8 | 72 | 100 | 73 | 91 | 91 | 47 | 92.1 | 100 | 86 | 80 | 0.0 | 0.51 | 0.53 | 0.51 | 0.74 | 0.76 | 0.53 | 100.0 | 14.0 | 5.0 |
sec | 2001_09 | dssp | 1jnx:X | 78.3 | 72 | 86 | 78 | 70 | 82 | 76 | 72.4 | 72 | 82 | 68 | 1.4 | 0.40 | 0.40 | 0.40 | 0.69 | 0.68 | 0.59 | 100.0 | 5.0 | 1.0 |
sec | 2001_09 | dssp | 1jr3:A | 87.7 | 96 | 86 | 75 | 95 | 78 | 88 | 88.7 | 95 | 87 | 80 | 0.2 | 0.56 | 0.54 | 0.58 | 0.79 | 0.83 | 0.74 | 100.0 | 6.0 | 1.0 |
sec | 2001_09 | dssp | 1jr3:D | 82.0 | 95 | 81 | 63 | 100 | 66 | 77 | 87.2 | 98 | 78 | 72 | 0.0 | 0.50 | 0.47 | 0.53 | 0.72 | 0.77 | 0.58 | 100.0 | 9.0 | 4.0 |
sec | 2001_09 | dssp | 1jx3:A | 71.5 | 88 | 70 | 53 | 59 | 67 | 76 | 62.5 | 79 | 65 | 55 | 0.0 | 0.33 | 0.34 | 0.34 | 0.69 | 0.48 | 0.43 | 100.0 | 7.0 | 1.0 |
sec | 2001_09 | dssp | 1jx5:A | 79.4 | 66 | 33 | 76 | 67 | 80 | 87 | 79.1 | 42 | 75 | 80 | 0.0 | 0.26 | 0.27 | 0.25 | 0.46 | 0.57 | 0.55 | 100.0 | 0.00 | 4.0 |
sec | 2001_09 | dssp | 1jzt:A | 83.1 | 81 | 90 | 86 | 73 | 82 | 82 | 86.4 | 90 | 87 | 83 | 0.0 | 0.51 | 0.52 | 0.51 | 0.78 | 0.75 | 0.66 | 100.0 | 3.0 | 2.0 |
sec | 2001_09 | dssp | THIS_month:psum | 78.0 | 66 | 74 | 64 | 72 | 78 | 71 | 78.8 | 70.9 | 79.6 | 71.7 | 1.3 | 0.39 | 0.38 | 0.40 | 0.67 | 0.68 | 0.57 | 84 | 4.9 | 4.1 |
sec | 2001_09 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |