METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2002_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_03 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2002_03 | dssp | THIS_month:psum | 77.2 | 64 | 61 | 62 | 68 | 77 | 73 | 74.8 | 68.6 | 76.5 | 68.8 | 3.4 | 0.39 | 0.39 | 0.40 | 0.67 | 0.65 | 0.58 | 80.7 | 7.0 | 7.6 |
sec | 2002_03 | dssp | 1gk7:A | 89.7 | 94 | 94 | 0 | 0 | 50 | 50 | 93.2 | 100 | 100 | 33 | 0.0 | 0.19 | 0.19 | 0.19 | 0.44 | 1.0 | 0.44 | 100.0 | 0.00 | 0.00 |
sec | 2002_03 | dssp | 1i60:A | 79.9 | 77 | 89 | 76 | 90 | 84 | 67 | 76.1 | 79 | 84 | 67 | 0.3 | 0.46 | 0.46 | 0.47 | 0.70 | 0.79 | 0.59 | 100.0 | 6.0 | 2.0 |
sec | 2002_03 | dssp | 1ib8:A | 82.3 | 94 | 67 | 85 | 90 | 72 | 87 | 91.4 | 100 | 93 | 84 | 1.8 | 0.51 | 0.53 | 0.51 | 0.73 | 0.82 | 0.67 | 0.0 | 9.0 | 1.0 |
sec | 2002_03 | dssp | 1j4w:A | 77.0 | 64 | 100 | 85 | 78 | 100 | 53 | 86.6 | 79 | 100 | 86 | 6.7 | 0.48 | 0.51 | 0.47 | 0.67 | 0.74 | 0.65 | 100.0 | 18.0 | 2.0 |
sec | 2002_03 | dssp | 1j5b:A | 97.3 | 97 | 100 | 0 | 0 | 100 | 66 | 98.6 | 100 | 100 | 75 | 0.0 | 0.65 | 0.75 | 0.56 | 0.80 | 1.0 | 0.80 | 100.0 | 2.0 | 0.00 |
sec | 2002_03 | dssp | 1j8c:A | 90.3 | 93 | 73 | 92 | 92 | 88 | 94 | 81.5 | 100 | 100 | 73 | 0.0 | 0.65 | 0.67 | 0.64 | 0.79 | 0.89 | 0.80 | 100.0 | 3.0 | 0.00 |
sec | 2002_03 | dssp | 1jjg:A | 74.5 | 100 | 37 | 100 | 66 | 59 | 100 | 51.1 | 81 | 100 | 37 | 0.0 | 0.46 | 0.51 | 0.41 | 0.57 | 0.71 | 0.59 | 100.0 | 9.0 | 15.0 |
sec | 2002_03 | dssp | 1jmk:O | 85.7 | 91 | 86 | 72 | 97 | 87 | 81 | 86.4 | 91 | 85 | 82 | 0.8 | 0.56 | 0.55 | 0.57 | 0.81 | 0.80 | 0.72 | 100.0 | 2.0 | 5.0 |
sec | 2002_03 | dssp | 1jmr:B | 87.4 | 94 | 94 | 73 | 85 | 85 | 78 | 85.3 | 97 | 83 | 71 | 0.0 | 0.62 | 0.61 | 0.63 | 0.90 | 0.74 | 0.72 | 100.0 | 0.00 | 2.0 |
sec | 2002_03 | dssp | 1jo8:A | 81.0 | 0 | 0 | 92 | 77 | 79 | 85 | 80.7 | 0 | 86 | 84 | 1.7 | 0.36 | 0.33 | 0.41 | 1.0 | 0.70 | 0.65 | 100.0 | 5.0 | 8.0 |
sec | 2002_03 | dssp | 1k11:A | 42.9 | 66 | 21 | 20 | 83 | 62 | 64 | 53.5 | 100 | 27 | 66 | 33.6 | 0.15 | 0.15 | 0.16 | 0.10 | 0.25 | 0.46 | 100.0 | 37.0 | 36.0 |
sec | 2002_03 | dssp | 1k24:A | 45.0 | 0 | 0 | 32 | 86 | 74 | 42 | 44.1 | 0 | 36 | 67 | 17.2 | 0.06 | 0.08 | 0.05 | -0.05 | 0.22 | 0.29 | 0.0 | 20.0 | 42.0 |
sec | 2002_03 | dssp | 1k8h:A | 67.7 | 74 | 45 | 55 | 83 | 73 | 76 | 76.5 | 81 | 67 | 81 | 9.7 | 0.26 | 0.27 | 0.26 | 0.43 | 0.56 | 0.54 | 0.0 | 12.0 | 11.0 |
sec | 2002_03 | dssp | 1kg0:C | 77.9 | 93 | 70 | 90 | 60 | 70 | 93 | 72.9 | 96 | 74 | 68 | 0.0 | 0.43 | 0.46 | 0.40 | 0.78 | 0.63 | 0.59 | 100.0 | 3.0 | 12.0 |
sec | 2002_03 | dssp | 1kil:E | 95.1 | 97 | 97 | 0 | 0 | 80 | 80 | 100.0 | 100 | 100 | 100 | 0.0 | 0.53 | 0.53 | 0.53 | 0.77 | 1.0 | 0.77 | 100.0 | 0.00 | 0.00 |
sec | 2002_03 | dssp | 1kj6:A | 80.0 | 0 | 0 | 84 | 84 | 92 | 78 | 79.7 | 0 | 93 | 87 | 0.0 | 0.44 | 0.35 | 0.53 | 1.0 | 0.78 | 0.58 | 100.0 | 11.0 | 0.00 |
sec | 2002_03 | dssp | 1kjk:A | 77.6 | 94 | 94 | 33 | 80 | 90 | 66 | 67.4 | 100 | 33 | 60 | 0.0 | 0.53 | 0.49 | 0.57 | 0.90 | 0.43 | 0.58 | 100.0 | 0.00 | 14.0 |
sec | 2002_03 | dssp | 1kl9:A | 68.0 | 0 | 0 | 80 | 58 | 65 | 80 | 61.6 | 0 | 85 | 53 | 6.0 | 0.18 | 0.16 | 0.21 | 1.0 | 0.39 | 0.49 | 100.0 | 6.0 | 15.0 |
sec | 2002_03 | dssp | 1kqf:B | 73.0 | 51 | 100 | 52 | 64 | 92 | 69 | 67.3 | 61 | 61 | 72 | 1.7 | 0.33 | 0.30 | 0.37 | 0.65 | 0.49 | 0.52 | 100.0 | 14.0 | 3.0 |
sec | 2002_03 | dssp | 1kqf:C | 83.8 | 90 | 90 | 42 | 60 | 64 | 61 | 73.2 | 78 | 34 | 57 | 0.4 | 0.31 | 0.31 | 0.32 | 0.62 | 0.49 | 0.53 | 100.0 | 0.00 | 0.00 |
sec | 2002_03 | dssp | 1kqr:A | 73.1 | 62 | 100 | 76 | 80 | 70 | 59 | 73.8 | 81 | 76 | 66 | 0.6 | 0.31 | 0.30 | 0.32 | 0.77 | 0.52 | 0.44 | 100.0 | 3.0 | 2.0 |
sec | 2002_03 | dssp | 1ktb:A | 78.4 | 77 | 84 | 66 | 78 | 85 | 74 | 76.0 | 82 | 72 | 73 | 2.3 | 0.41 | 0.41 | 0.42 | 0.72 | 0.64 | 0.61 | 0.0 | 2.0 | 3.0 |
sec | 2002_03 | dssp | 1kvk:A | 67.1 | 0 | 0 | 75 | 81 | 79 | 54 | 52.6 | 0 | 59 | 53 | 4.1 | 0.19 | 0.17 | 0.22 | -0.04 | 0.53 | 0.43 | 0.0 | 10.0 | 4.0 |
sec | 2002_03 | dssp | 1kvv:A | 84.6 | 96 | 76 | 100 | 66 | 75 | 97 | 77.7 | 100 | 91 | 67 | 0.0 | 0.57 | 0.61 | 0.55 | 0.79 | 0.78 | 0.72 | 100.0 | 7.0 | 5.0 |
sec | 2002_03 | dssp | 1kzy:C | 76.7 | 76 | 76 | 56 | 69 | 84 | 78 | 74.7 | 80 | 56 | 77 | 3.4 | 0.32 | 0.32 | 0.33 | 0.65 | 0.55 | 0.60 | 100.0 | 0.00 | 3.0 |
sec | 2002_03 | dssp | 1l1c:A | 72.7 | 0 | 0 | 90 | 66 | 66 | 80 | 63.5 | 0 | 96 | 51 | 0.0 | 0.28 | 0.26 | 0.32 | 1.0 | 0.59 | 0.46 | 100.0 | 5.0 | 14.0 |
sec | 2002_03 | dssp | THIS_month:psum | 77.2 | 64 | 61 | 62 | 68 | 77 | 73 | 74.8 | 68.6 | 76.5 | 68.8 | 3.4 | 0.39 | 0.39 | 0.40 | 0.67 | 0.65 | 0.58 | 80.7 | 7.0 | 7.6 |
sec | 2002_03 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |