METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2002_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_02 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2002_02 | dssp | THIS_month:psum | 72.9 | 61 | 72 | 48 | 55 | 74 | 70 | 67.8 | 68.5 | 76.9 | 62.8 | 2.1 | 0.32 | 0.31 | 0.33 | 0.60 | 0.66 | 0.48 | 89.6 | 5.8 | 7.2 |
sec | 2002_02 | dssp | 1eq1:A | 80.1 | 97 | 79 | 0 | 0 | 31 | 82 | 39.6 | 37 | 100 | 45 | 0.0 | 0.18 | 0.14 | 0.24 | 0.42 | 1.0 | 0.42 | 100.0 | 16.0 | 0.00 |
sec | 2002_02 | dssp | 1g9p:A | 57.8 | 0 | 0 | 44 | 44 | 66 | 73 | 32.2 | 0 | 35 | 33 | 0.0 | 0.11 | 0.12 | 0.10 | -0.10 | 0.30 | 0.00 | 100.0 | 6.0 | 0.00 |
sec | 2002_02 | dssp | 1h67:A | 76.9 | 78 | 87 | 0 | 0 | 74 | 65 | 81.5 | 85 | 100 | 73 | 0.0 | 0.24 | 0.26 | 0.23 | 0.56 | 1.0 | 0.51 | 100.0 | 6.0 | 1.0 |
sec | 2002_02 | dssp | 1i2v:A | 72.7 | 71 | 100 | 83 | 55 | 68 | 80 | 72.8 | 100 | 72 | 65 | 0.0 | 0.40 | 0.40 | 0.41 | 0.82 | 0.52 | 0.46 | 100.0 | 4.0 | 13.0 |
sec | 2002_02 | dssp | 1igq:D | 67.8 | 0 | 0 | 64 | 95 | 80 | 68 | 78.4 | 0 | 77 | 89 | 8.4 | 0.30 | 0.33 | 0.28 | -0.09 | 0.63 | 0.52 | 100.0 | 10.0 | 16.0 |
sec | 2002_02 | dssp | 1itp:A | 54.5 | 56 | 68 | 34 | 47 | 71 | 51 | 60.3 | 82 | 38 | 61 | 10.3 | 0.13 | 0.13 | 0.14 | 0.48 | 0.16 | 0.31 | 100.0 | 5.0 | 9.0 |
sec | 2002_02 | dssp | 1j7x:A | 78.1 | 80 | 89 | 75 | 68 | 77 | 74 | 74.9 | 85 | 75 | 66 | 0.6 | 0.42 | 0.43 | 0.42 | 0.76 | 0.64 | 0.57 | 0.0 | 3.0 | 1.0 |
sec | 2002_02 | dssp | 1jdq:A | 86.7 | 77 | 94 | 90 | 80 | 88 | 87 | 83.4 | 95 | 95 | 76 | 0.0 | 0.57 | 0.57 | 0.58 | 0.81 | 0.80 | 0.73 | 100.0 | 4.0 | 3.0 |
sec | 2002_02 | dssp | 1jeo:A | 90.4 | 94 | 94 | 91 | 81 | 83 | 87 | 87.2 | 90 | 89 | 81 | 0.0 | 0.65 | 0.66 | 0.66 | 0.88 | 0.84 | 0.78 | 100.0 | 0.00 | 1.0 |
sec | 2002_02 | dssp | 1jkz:A | 60.9 | 45 | 100 | 25 | 100 | 100 | 51 | 51.8 | 63 | 37 | 56 | 0.0 | 0.33 | 0.25 | 0.43 | 0.62 | 0.42 | 0.41 | 100.0 | 13.0 | 26.0 |
sec | 2002_02 | dssp | 1jmu:B | 67.6 | 75 | 78 | 41 | 45 | 70 | 65 | 54.5 | 61 | 51 | 50 | 4.2 | 0.26 | 0.26 | 0.26 | 0.61 | 0.32 | 0.42 | 100.0 | 1.0 | 1.0 |
sec | 2002_02 | dssp | 1jnr:B | 79.9 | 15 | 100 | 82 | 76 | 92 | 80 | 71.6 | 20 | 88 | 76 | 1.3 | 0.37 | 0.32 | 0.43 | 0.36 | 0.72 | 0.58 | 100.0 | 11.0 | 2.0 |
sec | 2002_02 | dssp | 1jrm:A | 73.1 | 77 | 92 | 86 | 54 | 64 | 76 | 56.6 | 90 | 97 | 38 | 0.0 | 0.43 | 0.44 | 0.42 | 0.78 | 0.57 | 0.46 | 100.0 | 4.0 | 12.0 |
sec | 2002_02 | dssp | 1jsb:A | 52.9 | 62 | 83 | 77 | 40 | 37 | 68 | 56.8 | 88 | 71 | 42 | 1.4 | 0.18 | 0.18 | 0.19 | 0.69 | 0.23 | 0.15 | 100.0 | 2.0 | 28.0 |
sec | 2002_02 | dssp | 1jw2:A | 83.3 | 89 | 86 | 0 | 0 | 70 | 77 | 81.5 | 100 | 100 | 54 | 0.0 | 0.30 | 0.30 | 0.31 | 0.61 | 1.0 | 0.61 | 100.0 | 2.0 | 0.00 |
sec | 2002_02 | dssp | 1jw3:A | 75.0 | 93 | 90 | 82 | 63 | 59 | 78 | 80.4 | 100 | 82 | 68 | 0.0 | 0.46 | 0.47 | 0.47 | 0.90 | 0.56 | 0.48 | 100.0 | 0.00 | 10.0 |
sec | 2002_02 | dssp | 1jy1:A | 68.9 | 61 | 59 | 63 | 83 | 76 | 69 | 59.4 | 50 | 63 | 63 | 4.1 | 0.25 | 0.25 | 0.26 | 0.44 | 0.65 | 0.46 | 100.0 | 0.00 | 5.0 |
sec | 2002_02 | dssp | 1jyg:A | 40.6 | 36 | 69 | 0 | 0 | 48 | 42 | 33.0 | 30 | 100 | 36 | 17.3 | 0.00 | 0.01 | 0.01 | 0.08 | 1.0 | 0.11 | 0.0 | 30.0 | 26.0 |
sec | 2002_02 | dssp | 1k0s:A | 78.8 | 85 | 66 | 77 | 77 | 78 | 82 | 83.5 | 68 | 80 | 90 | 2.6 | 0.38 | 0.39 | 0.37 | 0.72 | 0.61 | 0.62 | 100.0 | 2.0 | 0.00 |
sec | 2002_02 | dssp | 1k1f:A | 86.6 | 89 | 91 | 0 | 0 | 78 | 75 | 84.3 | 100 | 100 | 60 | 0.0 | 0.37 | 0.38 | 0.37 | 0.67 | 1.0 | 0.67 | 100.0 | 1.0 | 0.00 |
sec | 2002_02 | dssp | 1k28:D | 63.6 | 52 | 53 | 55 | 67 | 74 | 65 | 58.3 | 57 | 63 | 55 | 6.9 | 0.15 | 0.15 | 0.16 | 0.41 | 0.42 | 0.41 | 100.0 | 0.00 | 5.0 |
sec | 2002_02 | dssp | 1k6w:A | 76.6 | 70 | 88 | 66 | 85 | 87 | 67 | 75.9 | 76 | 75 | 75 | 0.9 | 0.40 | 0.39 | 0.42 | 0.69 | 0.69 | 0.57 | 0.0 | 7.0 | 4.0 |
sec | 2002_02 | dssp | 1kbh:A | 80.9 | 79 | 88 | 0 | 0 | 83 | 71 | 86.1 | 86 | 100 | 85 | 0.0 | 0.29 | 0.30 | 0.29 | 0.61 | 1.0 | 0.61 | 100.0 | 6.0 | 0.00 |
sec | 2002_02 | dssp | 1khc:A | 69.6 | 48 | 92 | 59 | 94 | 94 | 58 | 66.3 | 55 | 74 | 72 | 0.0 | 0.36 | 0.33 | 0.41 | 0.55 | 0.70 | 0.48 | 100.0 | 18.0 | 7.0 |
sec | 2002_02 | dssp | 1kps:B | 81.4 | 82 | 88 | 0 | 0 | 79 | 80 | 78.5 | 86 | 100 | 67 | 3.8 | 0.33 | 0.37 | 0.30 | 0.62 | 1.0 | 0.68 | 100.0 | 3.0 | 4.0 |
sec | 2002_02 | dssp | 1kq4:C | 72.7 | 88 | 72 | 69 | 90 | 63 | 58 | 87.7 | 100 | 100 | 63 | 0.0 | 0.43 | 0.43 | 0.43 | 0.72 | 0.68 | 0.40 | 100.0 | 6.0 | 9.0 |
sec | 2002_02 | dssp | 1kqi:A | 81.6 | 0 | 0 | 30 | 100 | 100 | 80 | 42.9 | 100 | 30 | 47 | 0.0 | 0.30 | 0.20 | 0.42 | 1.0 | 0.48 | 0.48 | 100.0 | 0.00 | 18.0 |
sec | 2002_02 | dssp | 1ktz:B | 78.3 | 0 | 0 | 72 | 83 | 87 | 75 | 74.4 | 0 | 79 | 74 | 0.0 | 0.28 | 0.26 | 0.31 | 1.0 | 0.61 | 0.57 | 100.0 | 2.0 | 5.0 |
sec | 2002_02 | dssp | 1kwh:A | 79.1 | 77 | 95 | 54 | 76 | 89 | 68 | 72.4 | 85 | 60 | 62 | 0.0 | 0.45 | 0.43 | 0.47 | 0.76 | 0.59 | 0.60 | 100.0 | 8.0 | 4.0 |
sec | 2002_02 | dssp | THIS_month:psum | 72.9 | 61 | 72 | 48 | 55 | 74 | 70 | 67.8 | 68.5 | 76.9 | 62.8 | 2.1 | 0.32 | 0.31 | 0.33 | 0.60 | 0.66 | 0.48 | 89.6 | 5.8 | 7.2 |
sec | 2002_02 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |