METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2001_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_02 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_02 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_02 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2001_02 | dssp | THIS_month:psum | 74.2 | 70 | 74 | 49 | 54 | 75 | 70 | 71.3 | 74.4 | 60.9 | 68.2 | 3 | 0.31 | 0.32 | 0.31 | 0.64 | 0.59 | 0.52 | 75 | 6.0 | 4.7 |
sec | 2001_02 | dssp | 1cwy:A | 79.2 | 86 | 88 | 40 | 54 | 82 | 75 | 74.3 | 83 | 45 | 73 | 2.8 | 0.38 | 0.38 | 0.39 | 0.77 | 0.39 | 0.63 | 100.0 | 0.00 | 3.0 |
sec | 2001_02 | dssp | 1dc1:A | 71.8 | 80 | 85 | 52 | 82 | 64 | 47 | 56.1 | 61 | 52 | 41 | 0.4 | 0.32 | 0.32 | 0.33 | 0.61 | 0.61 | 0.36 | 100.0 | 3.0 | 5.0 |
sec | 2001_02 | dssp | 1dyp:A | 68.1 | 0 | 0 | 58 | 84 | 88 | 58 | 61.0 | 0 | 60 | 68 | 0.7 | 0.16 | 0.15 | 0.19 | 1.0 | 0.48 | 0.44 | 0.0 | 4.0 | 16.0 |
sec | 2001_02 | dssp | 1eg7:A | 74.5 | 81 | 77 | 65 | 64 | 72 | 76 | 70.1 | 82 | 67 | 62 | 2.7 | 0.32 | 0.32 | 0.32 | 0.67 | 0.56 | 0.53 | 100.0 | 2.0 | 0.00 |
sec | 2001_02 | dssp | 1egu:A | 75.0 | 76 | 87 | 59 | 77 | 84 | 66 | 67.7 | 77 | 57 | 66 | 2.6 | 0.36 | 0.36 | 0.37 | 0.73 | 0.58 | 0.56 | 0.0 | 4.0 | 6.0 |
sec | 2001_02 | dssp | 1eha:A | 76.3 | 65 | 86 | 74 | 59 | 81 | 78 | 68.5 | 68 | 59 | 71 | 0.1 | 0.36 | 0.36 | 0.36 | 0.67 | 0.59 | 0.51 | 100.0 | 6.0 | 3.0 |
sec | 2001_02 | dssp | 1ehk:A | 72.5 | 76 | 88 | 0 | 0 | 63 | 56 | 58.8 | 60 | 0 | 56 | 6.0 | 0.17 | 0.20 | 0.15 | 0.46 | -0.03 | 0.45 | 0.0 | 9.0 | 6.0 |
sec | 2001_02 | dssp | 1ehk:C | 72.7 | 66 | 100 | 0 | 0 | 100 | 60 | 97.0 | 100 | 100 | 83 | 15.1 | 0.42 | 0.57 | 0.28 | 0.51 | 1.0 | 0.71 | 100.0 | 27.0 | 15.0 |
sec | 2001_02 | dssp | 1evy:A | 77.8 | 81 | 86 | 74 | 68 | 74 | 71 | 77.9 | 83 | 85 | 69 | 1.7 | 0.38 | 0.39 | 0.38 | 0.69 | 0.65 | 0.56 | 100.0 | 2.0 | 1.0 |
sec | 2001_02 | dssp | 1eyr:A | 78.2 | 79 | 82 | 70 | 82 | 81 | 73 | 78.5 | 79 | 77 | 78 | 0.8 | 0.41 | 0.41 | 0.42 | 0.72 | 0.69 | 0.58 | 0.0 | 1.0 | 3.0 |
sec | 2001_02 | dssp | 1f32:A | 70.9 | 62 | 100 | 71 | 69 | 81 | 56 | 53.8 | 50 | 65 | 49 | 3.4 | 0.36 | 0.36 | 0.37 | 0.70 | 0.57 | 0.48 | 0.0 | 14.0 | 0.00 |
sec | 2001_02 | dssp | 1fgu:A | 78.9 | 58 | 88 | 88 | 80 | 77 | 75 | 84.9 | 68 | 94 | 82 | 0.4 | 0.42 | 0.41 | 0.44 | 0.68 | 0.72 | 0.57 | 100.0 | 5.0 | 4.0 |
sec | 2001_02 | dssp | 1fiu:A | 68.9 | 74 | 72 | 56 | 63 | 66 | 66 | 66.9 | 73 | 60 | 60 | 3.1 | 0.21 | 0.21 | 0.22 | 0.50 | 0.54 | 0.42 | 100.0 | 1.0 | 1.0 |
sec | 2001_02 | dssp | 1fkm:A | 84.2 | 85 | 93 | 0 | 0 | 82 | 66 | 86.6 | 91 | 0 | 74 | 0.0 | 0.33 | 0.34 | 0.33 | 0.64 | 1.0 | 0.62 | 100.0 | 5.0 | 0.00 |
sec | 2001_02 | dssp | 1fqj:C | 68.4 | 66 | 66 | 0 | 0 | 69 | 84 | 60.5 | 36 | 100 | 76 | 5.2 | 0.16 | 0.19 | 0.14 | 0.44 | 1.0 | 0.48 | 100.0 | 0.00 | 10.0 |
sec | 2001_02 | dssp | 1fx2:A | 77.4 | 74 | 85 | 86 | 79 | 75 | 70 | 85.4 | 87 | 86 | 82 | 0.0 | 0.44 | 0.45 | 0.45 | 0.68 | 0.77 | 0.53 | 100.0 | 5.0 | 2.0 |
sec | 2001_02 | dssp | 1g47:A | 55.7 | 70 | 26 | 7 | 20 | 67 | 79 | 51.0 | 70 | 10 | 57 | 11.4 | 0.09 | 0.09 | 0.09 | 0.27 | 0.00 | 0.32 | 100.0 | 22.0 | 12.0 |
sec | 2001_02 | dssp | 1g8q:A | 83.3 | 84 | 89 | 0 | 0 | 80 | 73 | 88.2 | 87 | 100 | 89 | 0.0 | 0.32 | 0.33 | 0.32 | 0.64 | 1.0 | 0.64 | 100.0 | 3.0 | 0.00 |
sec | 2001_02 | dssp | 1g8y:A | 85.6 | 91 | 83 | 70 | 91 | 85 | 85 | 92.5 | 99 | 79 | 91 | 2.2 | 0.52 | 0.52 | 0.54 | 0.78 | 0.77 | 0.74 | 100.0 | 3.0 | 3.0 |
sec | 2001_02 | dssp | 1g9r:A | 71.9 | 71 | 78 | 69 | 78 | 73 | 63 | 72.1 | 73 | 78 | 66 | 1.8 | 0.30 | 0.30 | 0.31 | 0.58 | 0.67 | 0.46 | 100.0 | 3.0 | 2.0 |
sec | 2001_02 | dssp | 1gcu:A | 63.4 | 78 | 64 | 40 | 69 | 63 | 59 | 60.0 | 65 | 47 | 62 | 11.3 | 0.16 | 0.16 | 0.17 | 0.46 | 0.41 | 0.42 | 0.0 | 9.0 | 11.0 |
sec | 2001_02 | dssp | 1h8r:A | 68.6 | 70 | 64 | 75 | 57 | 64 | 77 | 65.6 | 69 | 70 | 61 | 3.7 | 0.24 | 0.25 | 0.23 | 0.52 | 0.57 | 0.45 | 0.0 | 2.0 | 5.0 |
sec | 2001_02 | dssp | 1how:A | 70.3 | 62 | 82 | 68 | 70 | 77 | 63 | 68.9 | 73 | 79 | 60 | 1.9 | 0.28 | 0.28 | 0.29 | 0.57 | 0.61 | 0.45 | 100.0 | 9.0 | 0.00 |
sec | 2001_02 | dssp | 1hqc:A | 78.3 | 96 | 74 | 52 | 76 | 68 | 84 | 78.4 | 97 | 52 | 68 | 1.2 | 0.40 | 0.39 | 0.42 | 0.71 | 0.59 | 0.59 | 100.0 | 12.0 | 3.0 |
sec | 2001_02 | dssp | 1hqm:E | 72.4 | 81 | 66 | 0 | 0 | 69 | 91 | 71.8 | 82 | 0 | 68 | 5.1 | 0.29 | 0.32 | 0.26 | 0.54 | -0.04 | 0.58 | 100.0 | 8.0 | 6.0 |
sec | 2001_02 | dssp | 1hqo:A | 85.0 | 82 | 96 | 89 | 77 | 88 | 72 | 89.8 | 92 | 87 | 86 | 0.0 | 0.54 | 0.55 | 0.53 | 0.77 | 0.81 | 0.68 | 100.0 | 8.0 | 1.0 |
sec | 2001_02 | dssp | 1i1i:P | 84.4 | 90 | 87 | 66 | 83 | 77 | 79 | 79.5 | 80 | 73 | 79 | 0.4 | 0.45 | 0.44 | 0.46 | 0.73 | 0.72 | 0.66 | 100.0 | 2.0 | 1.0 |
sec | 2001_02 | dssp | 1i25:A | 64.9 | 0 | 0 | 60 | 40 | 66 | 81 | 31.9 | 100 | 24 | 34 | 0.0 | 0.04 | 0.05 | 0.04 | 1.0 | 0.24 | 0.24 | 100.0 | 0.00 | 13.0 |
sec | 2001_02 | dssp | THIS_month:psum | 74.2 | 70 | 74 | 49 | 54 | 75 | 70 | 71.3 | 74.4 | 60.9 | 68.2 | 3 | 0.31 | 0.32 | 0.31 | 0.64 | 0.59 | 0.52 | 75 | 6.0 | 4.7 |
sec | 2001_02 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_02 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_02 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |