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EVA sec results for: PROFsec month: 2000_12

METHOD about:	../../../doc/explain_methods.html#PX_about_profsec
METHOD url:	PROFsec
TYPE :	sec
NPROT :	1554
NWEEKS :	107
NOTE 1 :	here ALL results obtained for PROFsec in month 2000_12 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_12 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_12	dssp	ALL_proteins:psum	76.7	79	83	70	72	77	73	73.0	71.2	72.5	68.8	2.2	0.37	0.37	0.38	0.70	0.63	0.56	8005.1	6.0	4.8
sec	2000_12	dssp	ALL_proteins:sig	9.3	32	32	33	35	12	11	13.6	28.0	25.6	14.7	3.7	0.14	0.15	0.14	0.21	0.23	0.15	7927.7	7.2	5.9
sec	2000_12	dssp	ALL_proteins:errsig	0.23	0.82	0.83	0.85	0.89	0.32	0.28	0.34	0.71	0.65	0.37	0.09	0.00	0.00	0.00	0.00	0.00	0.00	201.1	0.18	0.15
sec	2000_12	dssp	THIS_month:psum	79.2	72	78	54	57	77	74	75.7	80.7	73.5	70.0	2.0	0.39	0.38	0.39	0.69	0.64	0.58	86.6	4.2	3.2

sec	2000_12	dssp	1ci6:A	98.2	98	100	0	0	100	75	100.0	100	100	100	0.0	0.73	0.81	0.66	0.85	1.0	0.85	100.0	1.0	0.00
sec	2000_12	dssp	1ci6:B	95.7	100	95	0	0	50	100	95.7	100	100	50	0.0	0.53	0.40	0.66	0.69	1.0	0.69	100.0	4.0	0.00
sec	2000_12	dssp	1d7y:A	79.1	76	86	76	80	82	74	76.9	80	78	73	1.4	0.42	0.42	0.43	0.74	0.70	0.60	100.0	2.0	1.0
sec	2000_12	dssp	1dkc:A	86.5	0	0	76	83	91	88	79.8	100	100	72	0.0	0.39	0.39	0.40	1.0	0.69	0.69	100.0	0.00	2.0
sec	2000_12	dssp	1dl5:A	69.4	78	75	55	78	72	59	64.2	76	61	54	4.4	0.27	0.28	0.28	0.64	0.54	0.45	100.0	1.0	9.0
sec	2000_12	dssp	1dl9:A	65.0	65	43	53	30	65	84	58.1	52	39	61	2.0	0.12	0.14	0.11	0.36	0.35	0.32	100.0	11.0	4.0
sec	2000_12	dssp	1e2x:A	89.6	92	96	70	87	84	69	86.7	90	81	73	0.0	0.52	0.54	0.52	0.77	0.77	0.70	100.0	3.0	0.00
sec	2000_12	dssp	1edz:A	74.4	84	81	51	70	75	69	74.0	97	53	63	1.2	0.35	0.34	0.36	0.71	0.52	0.50	100.0	1.0	5.0
sec	2000_12	dssp	1ekt:A	81.1	85	60	66	76	87	90	78.9	100	80	75	5.6	0.43	0.44	0.42	0.66	0.61	0.73	100.0	5.0	3.0
sec	2000_12	dssp	1eo1:A	82.3	61	72	100	69	83	93	78.7	73	100	74	4.8	0.49	0.50	0.49	0.59	0.77	0.74	100.0	3.0	9.0
sec	2000_12	dssp	1ewn:A	70.4	51	70	75	70	76	69	62.0	54	84	53	3.0	0.26	0.26	0.27	0.50	0.61	0.47	100.0	6.0	2.0
sec	2000_12	dssp	1f2d:A	77.4	73	83	82	78	79	71	77.7	74	87	77	1.1	0.39	0.40	0.39	0.64	0.76	0.56	100.0	5.0	0.00
sec	2000_12	dssp	1f53:A	71.4	0	0	71	60	71	80	70.5	100	67	72	0.0	0.13	0.14	0.13	1.0	0.41	0.41	100.0	0.00	7.0
sec	2000_12	dssp	1f5q:B	83.8	87	90	0	0	75	69	87.8	91	100	77	0.0	0.29	0.30	0.29	0.60	1.0	0.60	100.0	2.0	0.00
sec	2000_12	dssp	1f62:A	84.3	75	50	50	33	88	97	72.5	71	50	74	3.9	0.41	0.47	0.36	0.57	0.34	0.65	100.0	3.0	3.0
sec	2000_12	dssp	1f6d:A	84.3	86	91	78	81	83	77	84.5	86	82	82	0.7	0.50	0.51	0.51	0.78	0.76	0.68	100.0	2.0	0.00
sec	2000_12	dssp	1f7c:A	86.8	88	94	0	0	83	77	84.8	92	100	72	0.0	0.46	0.50	0.43	0.76	1.0	0.70	100.0	4.0	2.0
sec	2000_12	dssp	1fjn:A	66.7	60	100	50	44	76	66	65.4	90	33	65	0.0	0.32	0.31	0.34	0.72	0.32	0.32	100.0	10.0	2.0
sec	2000_12	dssp	1fpo:A	83.0	91	86	0	0	59	76	56.1	61	100	45	1.7	0.26	0.27	0.26	0.53	1.0	0.57	100.0	4.0	1.0
sec	2000_12	dssp	1fr3:A	82.1	60	100	84	86	89	70	79.8	70	86	72	4.4	0.46	0.45	0.48	0.74	0.66	0.70	100.0	5.0	1.0
sec	2000_12	dssp	1fu1:A	65.7	78	75	52	71	58	47	51.2	43	67	65	6.7	0.21	0.22	0.22	0.58	0.48	0.33	100.0	1.0	7.0
sec	2000_12	dssp	1fwk:A	76.4	91	79	54	88	76	67	83.8	98	66	81	2.7	0.41	0.40	0.42	0.76	0.61	0.55	0.0	5.0	10.0
sec	2000_12	dssp	1fx3:A	76.9	75	97	85	75	70	64	78.2	94	67	77	0.0	0.48	0.48	0.49	0.79	0.69	0.49	0.0	7.0	4.0
sec	2000_12	dssp	1fxk:B	90.8	100	90	50	100	68	91	93.6	100	50	87	3.6	0.57	0.49	0.66	0.76	0.68	0.76	0.0	8.0	4.0
sec	2000_12	dssp	1fxo:A	82.5	85	85	80	88	80	76	78.9	85	85	69	0.3	0.50	0.50	0.51	0.76	0.80	0.64	100.0	0.00	2.0
sec	2000_12	dssp	1g6g:A	78.7	66	90	87	72	75	82	87.9	80	92	86	0.7	0.39	0.39	0.41	0.75	0.65	0.59	100.0	3.0	7.0
sec	2000_12	dssp	1g8k:A	73.8	62	85	59	74	88	68	66.4	67	66	65	2.1	0.31	0.30	0.33	0.62	0.59	0.54	100.0	9.0	3.0
sec	2000_12	dssp	1g99:A	77.9	78	81	73	78	79	74	80.0	81	81	77	3.7	0.37	0.37	0.38	0.65	0.70	0.61	100.0	1.0	1.0
sec	2000_12	dssp	1ga6:A	60.2	31	100	43	60	94	54	45.6	40	51	45	5.6	0.22	0.19	0.25	0.48	0.36	0.44	0.0	22.0	7.0
sec	2000_12	dssp	1gak:A	83.9	91	91	0	0	66	72	72.8	77	0	65	0.7	0.36	0.37	0.35	0.68	-0.02	0.59	100.0	0.00	1.0

sec	2000_12	dssp	THIS_month:psum	79.2	72	78	54	57	77	74	75.7	80.7	73.5	70.0	2.0	0.39	0.38	0.39	0.69	0.64	0.58	86.6	4.2	3.2

sec	2000_12	dssp	ALL_proteins:psum	76.7	79	83	70	72	77	73	73.0	71.2	72.5	68.8	2.2	0.37	0.37	0.38	0.70	0.63	0.56	8005.1	6.0	4.8
sec	2000_12	dssp	ALL_proteins:sig	9.3	32	32	33	35	12	11	13.6	28.0	25.6	14.7	3.7	0.14	0.15	0.14	0.21	0.23	0.15	7927.7	7.2	5.9
sec	2000_12	dssp	ALL_proteins:errsig	0.23	0.82	0.83	0.85	0.89	0.32	0.28	0.34	0.71	0.65	0.37	0.09	0.00	0.00	0.00	0.00	0.00	0.00	201.1	0.18	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2000_12
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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