METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2001_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_11 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_11 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2001_11 | dssp | THIS_month:psum | 78.9 | 66 | 63 | 30 | 27 | 74 | 77 | 69.3 | 84.0 | 70.7 | 61.2 | 1.3 | 0.34 | 0.35 | 0.33 | 0.70 | 0.82 | 0.54 | 85.7 | 6.5 | 5.5 |
sec | 2001_11 | dssp | 1ea6:A | 95.3 | 100 | 91 | 100 | 91 | 90 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 0.83 | 0.84 | 0.83 | 0.94 | 0.94 | 0.90 | 100.0 | 2.0 | 2.0 |
sec | 2001_11 | dssp | 1ea6:B | 87.1 | 85 | 92 | 95 | 84 | 82 | 84 | 86.3 | 89 | 100 | 76 | 0.0 | 0.62 | 0.62 | 0.62 | 0.83 | 0.86 | 0.72 | 0.0 | 2.0 | 3.0 |
sec | 2001_11 | dssp | 1go9:A | 85.4 | 85 | 96 | 0 | 0 | 85 | 54 | 74.3 | 76 | 100 | 62 | 0.0 | 0.32 | 0.36 | 0.28 | 0.60 | 1.0 | 0.60 | 100.0 | 9.0 | 0.00 |
sec | 2001_11 | dssp | 1goe:A | 85.4 | 85 | 96 | 0 | 0 | 85 | 54 | 74.3 | 76 | 100 | 62 | 0.0 | 0.32 | 0.36 | 0.28 | 0.60 | 1.0 | 0.60 | 100.0 | 9.0 | 0.00 |
sec | 2001_11 | dssp | 1hdl:A | 67.3 | 78 | 71 | 0 | 0 | 57 | 60 | 65.7 | 85 | 0 | 41 | 1.8 | 0.08 | 0.08 | 0.10 | 0.35 | 1.0 | 0.33 | 100.0 | 5.0 | 3.0 |
sec | 2001_11 | dssp | 1hek:A | 74.1 | 90 | 85 | 0 | 0 | 54 | 82 | 75.9 | 98 | 100 | 54 | 0.0 | 0.38 | 0.45 | 0.33 | 0.72 | 1.0 | 0.49 | 0.0 | 3.0 | 12.0 |
sec | 2001_11 | dssp | 1i26:A | 82.4 | 0 | 0 | 0 | 0 | 100 | 82 | 28.5 | 100 | 0 | 34 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 0.00 | 17.0 |
sec | 2001_11 | dssp | 1jo6:A | 55.6 | 75 | 42 | 0 | 0 | 51 | 90 | 38.6 | 42 | 100 | 37 | 0.0 | 0.16 | 0.23 | 0.10 | 0.44 | 1.0 | 0.20 | 100.0 | 13.0 | 22.0 |
sec | 2001_11 | dssp | 1jrj:A | 79.5 | 66 | 100 | 0 | 0 | 100 | 65 | 82.7 | 87 | 100 | 74 | 0.0 | 0.42 | 0.43 | 0.42 | 0.65 | 1.0 | 0.65 | 100.0 | 20.0 | 0.00 |
sec | 2001_11 | dssp | 1jyo:E | 69.6 | 86 | 72 | 16 | 28 | 63 | 72 | 59.7 | 73 | 16 | 55 | 7.8 | 0.23 | 0.22 | 0.25 | 0.53 | 0.14 | 0.50 | 100.0 | 9.0 | 4.0 |
sec | 2001_11 | dssp | 1jyo:F | 67.3 | 84 | 68 | 20 | 20 | 59 | 78 | 60.5 | 67 | 20 | 61 | 8.6 | 0.18 | 0.18 | 0.19 | 0.49 | 0.11 | 0.50 | 100.0 | 10.0 | 0.00 |
sec | 2001_11 | dssp | 1k5j:B | 87.9 | 0 | 0 | 95 | 86 | 76 | 90 | 76.7 | 100 | 79 | 73 | 0.0 | 0.46 | 0.45 | 0.48 | 1.0 | 0.74 | 0.74 | 100.0 | 0.00 | 6.0 |
sec | 2001_11 | dssp | 1k5j:C | 84.8 | 0 | 0 | 94 | 81 | 71 | 90 | 72.7 | 100 | 76 | 67 | 0.0 | 0.40 | 0.39 | 0.41 | 1.0 | 0.69 | 0.69 | 100.0 | 0.00 | 9.0 |
sec | 2001_11 | dssp | 1k99:A | 83.5 | 94 | 80 | 0 | 0 | 70 | 90 | 75.2 | 84 | 100 | 62 | 0.0 | 0.37 | 0.36 | 0.39 | 0.67 | 1.0 | 0.67 | 100.0 | 9.0 | 0.00 |
sec | 2001_11 | dssp | THIS_month:psum | 78.9 | 66 | 63 | 30 | 27 | 74 | 77 | 69.3 | 84.0 | 70.7 | 61.2 | 1.3 | 0.34 | 0.35 | 0.33 | 0.70 | 0.82 | 0.54 | 85.7 | 6.5 | 5.5 |
sec | 2001_11 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_11 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |