METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2000_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_09 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2000_09 | dssp | THIS_month:psum | 78.4 | 70 | 67 | 51 | 55 | 75 | 75 | 70.8 | 70.7 | 73.7 | 70.8 | 1.4 | 0.36 | 0.37 | 0.36 | 0.74 | 0.66 | 0.56 | 82.6 | 5.0 | 4.3 |
sec | 2000_09 | dssp | 1d1h:A | 68.6 | 66 | 50 | 50 | 44 | 75 | 81 | 70.4 | 60 | 41 | 81 | 2.8 | 0.17 | 0.18 | 0.17 | 0.53 | 0.30 | 0.37 | 100.0 | 2.0 | 2.0 |
sec | 2000_09 | dssp | 1d1n:A | 59.2 | 0 | 0 | 89 | 55 | 40 | 96 | 57.7 | 100 | 70 | 50 | 3.0 | 0.16 | 0.19 | 0.14 | 1.0 | 0.44 | 0.41 | 100.0 | 12.0 | 23.0 |
sec | 2000_09 | dssp | 1d2o:A | 68.4 | 0 | 0 | 67 | 81 | 76 | 54 | 69.3 | 0 | 75 | 65 | 0.5 | 0.13 | 0.12 | 0.14 | 1.0 | 0.43 | 0.39 | 100.0 | 3.0 | 10.0 |
sec | 2000_09 | dssp | 1deb:A | 94.4 | 95 | 97 | 0 | 0 | 83 | 71 | 72.8 | 71 | 100 | 100 | 0.0 | 0.49 | 0.52 | 0.47 | 0.74 | 1.0 | 0.74 | 100.0 | 1.0 | 0.00 |
sec | 2000_09 | dssp | 1dl0:A | 86.5 | 0 | 0 | 54 | 100 | 100 | 83 | 74.9 | 100 | 72 | 75 | 0.0 | 0.46 | 0.39 | 0.54 | 1.0 | 0.67 | 0.67 | 100.0 | 0.00 | 13.0 |
sec | 2000_09 | dssp | 1dlw:A | 88.8 | 89 | 93 | 0 | 0 | 87 | 80 | 82.6 | 85 | 100 | 77 | 0.0 | 0.47 | 0.48 | 0.47 | 0.75 | 1.0 | 0.75 | 100.0 | 2.0 | 0.00 |
sec | 2000_09 | dssp | 1dqc:A | 75.3 | 0 | 0 | 52 | 68 | 89 | 77 | 51.4 | 0 | 71 | 47 | 0.0 | 0.17 | 0.14 | 0.20 | 1.0 | 0.46 | 0.40 | 100.0 | 4.0 | 6.0 |
sec | 2000_09 | dssp | 1ekr:A | 81.8 | 90 | 83 | 70 | 86 | 83 | 76 | 81.3 | 87 | 90 | 68 | 4.1 | 0.48 | 0.48 | 0.49 | 0.79 | 0.69 | 0.69 | 100.0 | 2.0 | 5.0 |
sec | 2000_09 | dssp | 1eo6:A | 86.2 | 87 | 91 | 76 | 86 | 90 | 82 | 87.2 | 87 | 88 | 86 | 0.8 | 0.56 | 0.56 | 0.57 | 0.84 | 0.76 | 0.74 | 0.0 | 1.0 | 2.0 |
sec | 2000_09 | dssp | 1esm:A | 74.3 | 75 | 81 | 64 | 82 | 76 | 65 | 66.8 | 60 | 69 | 76 | 0.9 | 0.34 | 0.34 | 0.35 | 0.62 | 0.68 | 0.49 | 100.0 | 3.0 | 3.0 |
sec | 2000_09 | dssp | 1euj:A | 69.5 | 58 | 71 | 68 | 69 | 72 | 69 | 67.0 | 62 | 64 | 70 | 1.2 | 0.23 | 0.23 | 0.24 | 0.61 | 0.48 | 0.41 | 100.0 | 1.0 | 0.00 |
sec | 2000_09 | dssp | 1eyq:A | 80.7 | 91 | 93 | 66 | 86 | 81 | 64 | 77.5 | 94 | 61 | 75 | 0.0 | 0.53 | 0.53 | 0.54 | 0.88 | 0.66 | 0.58 | 100.0 | 0.00 | 7.0 |
sec | 2000_09 | dssp | 1ezj:A | 84.2 | 90 | 93 | 0 | 0 | 59 | 59 | 70.9 | 70 | 100 | 75 | 0.0 | 0.30 | 0.34 | 0.28 | 0.60 | 1.0 | 0.49 | 100.0 | 2.0 | 2.0 |
sec | 2000_09 | dssp | 1ezw:A | 85.0 | 83 | 95 | 82 | 78 | 87 | 77 | 78.3 | 88 | 73 | 68 | 0.0 | 0.55 | 0.56 | 0.55 | 0.81 | 0.77 | 0.69 | 100.0 | 5.0 | 0.00 |
sec | 2000_09 | dssp | 1f3v:A | 71.5 | 94 | 65 | 44 | 94 | 57 | 77 | 65.4 | 74 | 50 | 63 | 10.1 | 0.31 | 0.28 | 0.34 | 0.55 | 0.59 | 0.54 | 0.0 | 20.0 | 12.0 |
sec | 2000_09 | dssp | 1f5x:A | 81.2 | 92 | 82 | 0 | 0 | 56 | 77 | 71.8 | 75 | 100 | 63 | 0.0 | 0.24 | 0.23 | 0.26 | 0.54 | 1.0 | 0.54 | 100.0 | 8.0 | 0.00 |
sec | 2000_09 | dssp | 1few:A | 91.3 | 91 | 99 | 0 | 0 | 91 | 50 | 62.3 | 61 | 100 | 88 | 1.7 | 0.39 | 0.51 | 0.28 | 0.59 | 1.0 | 0.64 | 100.0 | 7.0 | 1.0 |
sec | 2000_09 | dssp | 1fjf:B | 82.5 | 88 | 85 | 79 | 73 | 77 | 81 | 77.5 | 89 | 74 | 66 | 0.0 | 0.46 | 0.47 | 0.47 | 0.75 | 0.73 | 0.64 | 100.0 | 1.0 | 0.00 |
sec | 2000_09 | dssp | 1fjf:C | 65.0 | 78 | 67 | 72 | 45 | 52 | 78 | 65.7 | 63 | 65 | 66 | 5.3 | 0.22 | 0.23 | 0.22 | 0.57 | 0.45 | 0.42 | 0.0 | 5.0 | 10.0 |
sec | 2000_09 | dssp | 1fjf:I | 78.0 | 97 | 73 | 66 | 70 | 69 | 85 | 63.5 | 77 | 66 | 55 | 0.0 | 0.45 | 0.46 | 0.45 | 0.76 | 0.62 | 0.57 | 100.0 | 10.0 | 0.00 |
sec | 2000_09 | dssp | 1fjf:J | 66.3 | 100 | 40 | 64 | 64 | 60 | 87 | 73.6 | 76 | 62 | 77 | 4.0 | 0.27 | 0.30 | 0.25 | 0.56 | 0.51 | 0.46 | 0.0 | 19.0 | 0.00 |
sec | 2000_09 | dssp | 1fjf:K | 88.2 | 86 | 96 | 93 | 81 | 85 | 89 | 85.3 | 90 | 100 | 76 | 0.0 | 0.63 | 0.64 | 0.64 | 0.88 | 0.82 | 0.76 | 100.0 | 2.0 | 4.0 |
sec | 2000_09 | dssp | 1fjf:N | 76.7 | 72 | 88 | 25 | 25 | 85 | 76 | 57.2 | 59 | 6 | 62 | 0.0 | 0.33 | 0.33 | 0.34 | 0.70 | 0.19 | 0.52 | 100.0 | 6.0 | 0.00 |
sec | 2000_09 | dssp | THIS_month:psum | 78.4 | 70 | 67 | 51 | 55 | 75 | 75 | 70.8 | 70.7 | 73.7 | 70.8 | 1.4 | 0.36 | 0.37 | 0.36 | 0.74 | 0.66 | 0.56 | 82.6 | 5.0 | 4.3 |
sec | 2000_09 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |