METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2002_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_05 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2002_05 | dssp | THIS_month:psum | 73.3 | 63 | 67 | 49 | 47 | 70 | 70 | 69.2 | 65.7 | 76.1 | 63.6 | 2.3 | 0.30 | 0.29 | 0.30 | 0.61 | 0.69 | 0.47 | 78.9 | 7.9 | 5.5 |
sec | 2002_05 | dssp | 1cix:A | 70.5 | 0 | 0 | 45 | 41 | 78 | 81 | 71.3 | 100 | 61 | 73 | 0.0 | 0.04 | 0.05 | 0.04 | 1.0 | 0.23 | 0.23 | 100.0 | 0.00 | 2.0 |
sec | 2002_05 | dssp | 1go4:G | 76.0 | 97 | 75 | 0 | 0 | 33 | 77 | 68.1 | 78 | 0 | 38 | 8.0 | 0.17 | 0.10 | 0.26 | 0.33 | 1.0 | 0.43 | 0.0 | 20.0 | 8.0 |
sec | 2002_05 | dssp | 1hxv:A | 77.6 | 55 | 100 | 87 | 69 | 75 | 82 | 76.8 | 66 | 87 | 72 | 1.1 | 0.37 | 0.36 | 0.39 | 0.72 | 0.62 | 0.57 | 100.0 | 4.0 | 9.0 |
sec | 2002_05 | dssp | 1i36:A | 82.4 | 90 | 90 | 74 | 76 | 70 | 68 | 83.1 | 87 | 81 | 74 | 0.0 | 0.48 | 0.48 | 0.48 | 0.77 | 0.71 | 0.56 | 100.0 | 0.00 | 0.00 |
sec | 2002_05 | dssp | 1iko:P | 68.8 | 0 | 0 | 83 | 56 | 72 | 79 | 60.0 | 0 | 78 | 60 | 3.5 | 0.17 | 0.15 | 0.20 | 1.0 | 0.50 | 0.43 | 100.0 | 9.0 | 14.0 |
sec | 2002_05 | dssp | 1ir6:A | 81.0 | 86 | 85 | 60 | 77 | 80 | 75 | 81.9 | 82 | 67 | 85 | 1.5 | 0.40 | 0.40 | 0.41 | 0.72 | 0.64 | 0.63 | 100.0 | 0.00 | 2.0 |
sec | 2002_05 | dssp | 1jjv:A | 91.4 | 100 | 86 | 88 | 100 | 82 | 95 | 96.6 | 100 | 100 | 91 | 0.0 | 0.74 | 0.73 | 0.76 | 0.87 | 0.93 | 0.82 | 100.0 | 6.0 | 1.0 |
sec | 2002_05 | dssp | 1jni:A | 51.6 | 0 | 0 | 50 | 8 | 68 | 76 | 48.9 | 0 | 37 | 63 | 11.2 | 0.01 | 0.02 | 0.02 | 1.0 | 0.07 | 0.17 | 100.0 | 22.0 | 30.0 |
sec | 2002_05 | dssp | 1jsx:A | 91.4 | 100 | 89 | 0 | 0 | 66 | 100 | 97.1 | 100 | 100 | 88 | 0.0 | 0.57 | 0.52 | 0.64 | 0.77 | 1.0 | 0.77 | 100.0 | 8.0 | 0.00 |
sec | 2002_05 | dssp | 1juh:B | 79.2 | 0 | 0 | 88 | 80 | 81 | 77 | 74.0 | 0 | 83 | 75 | 0.0 | 0.38 | 0.33 | 0.43 | 1.0 | 0.71 | 0.58 | 0.0 | 6.0 | 3.0 |
sec | 2002_05 | dssp | 1k3r:B | 78.8 | 75 | 78 | 90 | 73 | 75 | 82 | 80.2 | 83 | 93 | 73 | 1.1 | 0.42 | 0.43 | 0.42 | 0.68 | 0.75 | 0.59 | 100.0 | 1.0 | 5.0 |
sec | 2002_05 | dssp | 1k45:A | 76.8 | 0 | 0 | 88 | 74 | 71 | 79 | 73.8 | 0 | 82 | 70 | 0.0 | 0.29 | 0.27 | 0.32 | 1.0 | 0.61 | 0.53 | 100.0 | 3.0 | 8.0 |
sec | 2002_05 | dssp | 1kjy:B | 57.1 | 64 | 55 | 0 | 0 | 50 | 60 | 58.4 | 66 | 100 | 50 | 0.0 | 0.01 | 0.01 | 0.02 | 0.14 | 1.0 | 0.14 | 100.0 | 8.0 | 0.00 |
sec | 2002_05 | dssp | 1kpp:A | 74.3 | 84 | 82 | 63 | 59 | 73 | 76 | 77.1 | 100 | 43 | 78 | 0.0 | 0.37 | 0.38 | 0.37 | 0.76 | 0.50 | 0.48 | 100.0 | 0.00 | 1.0 |
sec | 2002_05 | dssp | 1kr7:A | 86.4 | 90 | 91 | 0 | 0 | 76 | 74 | 87.6 | 92 | 100 | 74 | 0.0 | 0.35 | 0.36 | 0.35 | 0.65 | 1.0 | 0.65 | 100.0 | 0.00 | 0.00 |
sec | 2002_05 | dssp | 1ksh:B | 65.5 | 62 | 45 | 63 | 86 | 70 | 52 | 72.4 | 68 | 74 | 69 | 8.1 | 0.19 | 0.20 | 0.18 | 0.43 | 0.50 | 0.42 | 100.0 | 5.0 | 15.0 |
sec | 2002_05 | dssp | 1ktg:A | 79.6 | 82 | 100 | 66 | 95 | 97 | 58 | 85.8 | 92 | 85 | 80 | 0.7 | 0.55 | 0.55 | 0.56 | 0.87 | 0.68 | 0.63 | 100.0 | 5.0 | 13.0 |
sec | 2002_05 | dssp | 1kuu:A | 78.2 | 70 | 82 | 79 | 79 | 80 | 75 | 80.2 | 78 | 83 | 78 | 2.9 | 0.39 | 0.39 | 0.40 | 0.71 | 0.66 | 0.61 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1kv4:A | 85.7 | 93 | 87 | 0 | 0 | 66 | 80 | 62.8 | 68 | 100 | 45 | 0.0 | 0.33 | 0.32 | 0.35 | 0.63 | 1.0 | 0.63 | 100.0 | 4.0 | 0.00 |
sec | 2002_05 | dssp | 1kyq:B | 69.2 | 86 | 64 | 60 | 87 | 54 | 70 | 71.1 | 81 | 67 | 59 | 4.0 | 0.27 | 0.27 | 0.29 | 0.50 | 0.68 | 0.42 | 100.0 | 14.0 | 5.0 |
sec | 2002_05 | dssp | 1l1d:B | 76.2 | 64 | 100 | 62 | 75 | 91 | 69 | 71.0 | 74 | 71 | 68 | 1.3 | 0.41 | 0.39 | 0.44 | 0.75 | 0.58 | 0.58 | 100.0 | 9.0 | 4.0 |
sec | 2002_05 | dssp | 1l1s:A | 73.0 | 50 | 100 | 92 | 71 | 93 | 60 | 75.4 | 67 | 93 | 73 | 7.2 | 0.43 | 0.44 | 0.43 | 0.58 | 0.74 | 0.62 | 0.0 | 23.0 | 7.0 |
sec | 2002_05 | dssp | 1ldj:A | 87.3 | 97 | 86 | 0 | 0 | 57 | 88 | 93.6 | 100 | 100 | 75 | 0.0 | 0.37 | 0.33 | 0.42 | 0.64 | 1.0 | 0.64 | 100.0 | 9.0 | 0.00 |
sec | 2002_05 | dssp | 1ldj:B | 70.5 | 90 | 50 | 70 | 56 | 66 | 88 | 59.0 | 89 | 52 | 56 | 2.2 | 0.27 | 0.30 | 0.25 | 0.61 | 0.50 | 0.48 | 100.0 | 10.0 | 5.0 |
sec | 2002_05 | dssp | 1ldv:A | 54.9 | 0 | 0 | 14 | 29 | 85 | 60 | 13.2 | 0 | 4 | 19 | 2.6 | 0.01 | 0.01 | 0.01 | -0.06 | 0.03 | 0.02 | 100.0 | 12.0 | 12.0 |
sec | 2002_05 | dssp | 1lgj:A | 63.1 | 78 | 68 | 0 | 0 | 36 | 48 | 47.2 | 60 | 100 | 26 | 0.0 | 0.01 | 0.02 | 0.02 | 0.15 | 1.0 | 0.15 | 100.0 | 9.0 | 0.00 |
sec | 2002_05 | dssp | 1lgo:A | 58.7 | 61 | 84 | 0 | 0 | 52 | 52 | 55.0 | 64 | 100 | 38 | 9.0 | 0.09 | 0.11 | 0.07 | 0.37 | 1.0 | 0.28 | 0.0 | 17.0 | 17.0 |
sec | 2002_05 | dssp | 1lgz:A | 67.1 | 57 | 79 | 0 | 0 | 80 | 58 | 64.0 | 57 | 100 | 72 | 0.0 | 0.10 | 0.11 | 0.11 | 0.37 | 1.0 | 0.37 | 0.0 | 15.0 | 0.00 |
sec | 2002_05 | dssp | 1lh8:A | 74.0 | 73 | 91 | 0 | 0 | 75 | 44 | 75.5 | 81 | 100 | 54 | 0.0 | 0.14 | 0.16 | 0.13 | 0.41 | 1.0 | 0.41 | 100.0 | 15.0 | 0.00 |
sec | 2002_05 | dssp | 1li1:A | 70.6 | 39 | 34 | 65 | 83 | 82 | 70 | 72.5 | 37 | 74 | 78 | 5.2 | 0.25 | 0.25 | 0.25 | 0.29 | 0.57 | 0.52 | 100.0 | 1.0 | 9.0 |
sec | 2002_05 | dssp | 1li5:A | 84.8 | 90 | 96 | 59 | 86 | 91 | 74 | 79.8 | 92 | 68 | 72 | 0.0 | 0.58 | 0.57 | 0.60 | 0.89 | 0.66 | 0.70 | 100.0 | 2.0 | 6.0 |
sec | 2002_05 | dssp | 1lja:A | 70.6 | 82 | 77 | 0 | 0 | 42 | 50 | 51.6 | 58 | 100 | 32 | 0.0 | 0.05 | 0.05 | 0.06 | 0.25 | 1.0 | 0.25 | 100.0 | 4.0 | 0.00 |
sec | 2002_05 | dssp | 1lk8:A | 51.0 | 48 | 43 | 57 | 40 | 50 | 64 | 46.9 | 39 | 58 | 47 | 9.1 | 0.06 | 0.07 | 0.06 | 0.19 | 0.34 | 0.21 | 0.0 | 3.0 | 7.0 |
sec | 2002_05 | dssp | 1ll3:A | 71.7 | 69 | 85 | 68 | 68 | 75 | 63 | 67.1 | 74 | 61 | 63 | 1.7 | 0.31 | 0.31 | 0.31 | 0.64 | 0.60 | 0.46 | 100.0 | 7.0 | 0.00 |
sec | 2002_05 | dssp | 1ln4:A | 89.8 | 90 | 100 | 100 | 76 | 84 | 88 | 87.7 | 100 | 100 | 73 | 0.0 | 0.73 | 0.74 | 0.72 | 0.91 | 0.84 | 0.78 | 0.0 | 4.0 | 6.0 |
sec | 2002_05 | dssp | 1lpl:A | 76.8 | 54 | 100 | 83 | 63 | 77 | 85 | 72.2 | 72 | 74 | 71 | 3.1 | 0.35 | 0.34 | 0.37 | 0.71 | 0.57 | 0.60 | 100.0 | 5.0 | 10.0 |
sec | 2002_05 | dssp | 1lr0:A | 66.7 | 48 | 97 | 91 | 84 | 87 | 43 | 46.7 | 33 | 95 | 72 | 0.7 | 0.42 | 0.43 | 0.42 | 0.51 | 0.84 | 0.42 | 100.0 | 27.0 | 1.0 |
sec | 2002_05 | dssp | 1lu7:A | 57.4 | 88 | 66 | 37 | 17 | 35 | 71 | 46.8 | 62 | 22 | 36 | 4.0 | 0.20 | 0.21 | 0.20 | 0.57 | 0.12 | 0.25 | 0.0 | 13.0 | 11.0 |
sec | 2002_05 | dssp | THIS_month:psum | 73.3 | 63 | 67 | 49 | 47 | 70 | 70 | 69.2 | 65.7 | 76.1 | 63.6 | 2.3 | 0.30 | 0.29 | 0.30 | 0.61 | 0.69 | 0.47 | 78.9 | 7.9 | 5.5 |
sec | 2002_05 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |