METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2002_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_01 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_01 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2002_01 | dssp | THIS_month:psum | 76.9 | 63 | 74 | 44 | 49 | 78 | 70 | 70.6 | 75.0 | 72.4 | 68.9 | 1.7 | 0.35 | 0.35 | 0.35 | 0.67 | 0.68 | 0.54 | 86.1 | 6.9 | 3.8 |
sec | 2002_01 | dssp | 1ear:A | 74.6 | 64 | 71 | 81 | 80 | 73 | 70 | 77.4 | 74 | 92 | 65 | 2.8 | 0.33 | 0.33 | 0.34 | 0.59 | 0.68 | 0.53 | 100.0 | 2.0 | 0.00 |
sec | 2002_01 | dssp | 1ez4:A | 74.0 | 58 | 100 | 81 | 76 | 91 | 58 | 74.3 | 67 | 87 | 74 | 2.7 | 0.42 | 0.43 | 0.43 | 0.65 | 0.72 | 0.56 | 0.0 | 19.0 | 1.0 |
sec | 2002_01 | dssp | 1ez4:B | 72.6 | 52 | 100 | 81 | 76 | 95 | 57 | 71.6 | 61 | 87 | 74 | 4.1 | 0.41 | 0.41 | 0.42 | 0.61 | 0.72 | 0.59 | 0.0 | 21.0 | 1.0 |
sec | 2002_01 | dssp | 1hj0:A | 63.4 | 56 | 94 | 0 | 0 | 88 | 36 | 48.1 | 45 | 100 | 64 | 0.0 | 0.13 | 0.15 | 0.11 | 0.37 | 1.0 | 0.37 | 100.0 | 31.0 | 0.00 |
sec | 2002_01 | dssp | 1hty:A | 75.6 | 74 | 80 | 65 | 75 | 82 | 73 | 70.6 | 71 | 71 | 69 | 2.7 | 0.34 | 0.34 | 0.35 | 0.70 | 0.58 | 0.57 | 100.0 | 1.0 | 3.0 |
sec | 2002_01 | dssp | 1hzm:A | 68.2 | 90 | 58 | 72 | 32 | 57 | 93 | 72.3 | 89 | 50 | 67 | 1.9 | 0.29 | 0.33 | 0.27 | 0.59 | 0.42 | 0.49 | 100.0 | 15.0 | 9.0 |
sec | 2002_01 | dssp | 1ijh:A | 73.1 | 51 | 92 | 69 | 78 | 88 | 66 | 62.5 | 63 | 72 | 57 | 0.2 | 0.36 | 0.34 | 0.39 | 0.61 | 0.66 | 0.49 | 100.0 | 12.0 | 2.0 |
sec | 2002_01 | dssp | 1ijl:A | 64.2 | 46 | 96 | 66 | 31 | 82 | 60 | 65.3 | 58 | 53 | 74 | 3.2 | 0.23 | 0.24 | 0.23 | 0.53 | 0.39 | 0.38 | 100.0 | 24.0 | 8.0 |
sec | 2002_01 | dssp | 1jad:A | 89.7 | 96 | 92 | 0 | 0 | 48 | 70 | 56.7 | 58 | 100 | 46 | 0.0 | 0.30 | 0.28 | 0.32 | 0.57 | 1.0 | 0.53 | 100.0 | 3.0 | 0.00 |
sec | 2002_01 | dssp | 1jgk:A | 86.4 | 0 | 0 | 76 | 86 | 92 | 86 | 78.9 | 100 | 76 | 80 | 0.0 | 0.40 | 0.40 | 0.42 | 1.0 | 0.70 | 0.70 | 100.0 | 0.00 | 4.0 |
sec | 2002_01 | dssp | 1jgs:A | 87.7 | 98 | 86 | 81 | 90 | 65 | 90 | 91.6 | 100 | 90 | 74 | 0.0 | 0.58 | 0.55 | 0.61 | 0.78 | 0.84 | 0.69 | 100.0 | 8.0 | 0.00 |
sec | 2002_01 | dssp | 1jh1:A | 82.3 | 68 | 96 | 84 | 53 | 87 | 90 | 80.6 | 68 | 86 | 83 | 4.4 | 0.46 | 0.47 | 0.46 | 0.76 | 0.59 | 0.72 | 100.0 | 6.0 | 8.0 |
sec | 2002_01 | dssp | 1jke:A | 78.6 | 85 | 100 | 80 | 73 | 72 | 73 | 72.2 | 88 | 69 | 65 | 2.7 | 0.48 | 0.48 | 0.49 | 0.90 | 0.58 | 0.58 | 100.0 | 3.0 | 4.0 |
sec | 2002_01 | dssp | 1joc:A | 54.5 | 53 | 64 | 0 | 0 | 71 | 45 | 29.2 | 26 | 0 | 50 | 6.5 | 0.04 | 0.04 | 0.05 | 0.16 | 1.0 | 0.25 | 0.0 | 9.0 | 9.0 |
sec | 2002_01 | dssp | 1jr8:A | 90.5 | 93 | 93 | 0 | 0 | 84 | 84 | 97.9 | 99 | 100 | 94 | 0.0 | 0.50 | 0.51 | 0.51 | 0.77 | 1.0 | 0.77 | 100.0 | 0.00 | 0.00 |
sec | 2002_01 | dssp | 1jr8:B | 90.5 | 91 | 94 | 0 | 0 | 87 | 81 | 89.8 | 86 | 100 | 100 | 0.0 | 0.50 | 0.51 | 0.50 | 0.77 | 1.0 | 0.77 | 100.0 | 1.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:A | 91.5 | 94 | 93 | 0 | 0 | 85 | 88 | 98.8 | 99 | 100 | 98 | 0.0 | 0.54 | 0.55 | 0.55 | 0.80 | 1.0 | 0.80 | 100.0 | 0.00 | 0.00 |
sec | 2002_01 | dssp | 1jra:C | 92.4 | 95 | 93 | 0 | 0 | 85 | 90 | 98.5 | 99 | 100 | 97 | 0.0 | 0.58 | 0.58 | 0.59 | 0.82 | 1.0 | 0.82 | 100.0 | 1.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:D | 91.3 | 92 | 94 | 0 | 0 | 88 | 85 | 86.3 | 82 | 100 | 95 | 0.0 | 0.54 | 0.55 | 0.54 | 0.80 | 1.0 | 0.80 | 100.0 | 0.00 | 0.00 |
sec | 2002_01 | dssp | 1jy8:A | 70.3 | 69 | 90 | 58 | 84 | 82 | 53 | 58.7 | 75 | 49 | 51 | 0.0 | 0.38 | 0.37 | 0.39 | 0.70 | 0.60 | 0.43 | 0.0 | 8.0 | 9.0 |
sec | 2002_01 | dssp | 1k04:A | 85.2 | 88 | 92 | 0 | 0 | 74 | 63 | 80.0 | 81 | 100 | 75 | 0.0 | 0.29 | 0.30 | 0.28 | 0.59 | 1.0 | 0.59 | 100.0 | 3.0 | 0.00 |
sec | 2002_01 | dssp | 1k2f:A | 71.1 | 60 | 69 | 68 | 86 | 78 | 61 | 66.5 | 64 | 84 | 51 | 1.0 | 0.31 | 0.31 | 0.32 | 0.56 | 0.64 | 0.45 | 100.0 | 2.0 | 8.0 |
sec | 2002_01 | dssp | 1k7c:A | 71.7 | 64 | 93 | 56 | 47 | 83 | 69 | 65.3 | 70 | 55 | 64 | 4.2 | 0.30 | 0.31 | 0.31 | 0.67 | 0.42 | 0.53 | 100.0 | 12.0 | 3.0 |
sec | 2002_01 | dssp | 1k8t:A | 62.5 | 67 | 69 | 35 | 39 | 67 | 62 | 63.1 | 76 | 37 | 57 | 7.4 | 0.12 | 0.13 | 0.13 | 0.45 | 0.26 | 0.38 | 100.0 | 1.0 | 1.0 |
sec | 2002_01 | dssp | 1k9q:A | 90.0 | 0 | 0 | 69 | 100 | 100 | 87 | 82.5 | 100 | 76 | 85 | 0.0 | 0.57 | 0.53 | 0.62 | 1.0 | 0.77 | 0.77 | 100.0 | 0.00 | 10.0 |
sec | 2002_01 | dssp | 1k9r:A | 85.0 | 0 | 0 | 60 | 100 | 100 | 80 | 81.0 | 100 | 80 | 81 | 0.0 | 0.47 | 0.42 | 0.53 | 1.0 | 0.69 | 0.69 | 100.0 | 0.00 | 15.0 |
sec | 2002_01 | dssp | 1kb0:A | 78.7 | 15 | 66 | 77 | 85 | 92 | 75 | 67.2 | 17 | 79 | 68 | 1.7 | 0.35 | 0.32 | 0.40 | 0.29 | 0.71 | 0.62 | 100.0 | 8.0 | 3.0 |
sec | 2002_01 | dssp | 1kbe:A | 49.0 | 0 | 0 | 18 | 50 | 57 | 70 | 43.0 | 100 | 27 | 45 | 0.0 | 0.14 | 0.18 | 0.11 | 1.0 | 0.19 | -0.20 | 100.0 | 28.0 | 14.0 |
sec | 2002_01 | dssp | 1khv:B | 65.0 | 74 | 70 | 34 | 51 | 67 | 62 | 59.2 | 72 | 42 | 51 | 6.0 | 0.16 | 0.16 | 0.17 | 0.51 | 0.33 | 0.40 | 100.0 | 2.0 | 5.0 |
sec | 2002_01 | dssp | 1kkc:A | 78.5 | 86 | 85 | 60 | 88 | 70 | 63 | 68.3 | 63 | 80 | 76 | 0.5 | 0.38 | 0.37 | 0.40 | 0.67 | 0.69 | 0.51 | 100.0 | 1.0 | 3.0 |
sec | 2002_01 | dssp | 1kkc:B | 78.9 | 86 | 86 | 60 | 88 | 71 | 64 | 64.7 | 64 | 80 | 60 | 0.5 | 0.39 | 0.38 | 0.40 | 0.68 | 0.69 | 0.52 | 100.0 | 0.00 | 4.0 |
sec | 2002_01 | dssp | 1kkc:X | 77.5 | 85 | 84 | 60 | 88 | 68 | 62 | 63.6 | 63 | 80 | 58 | 0.5 | 0.36 | 0.36 | 0.38 | 0.65 | 0.69 | 0.49 | 100.0 | 1.0 | 3.0 |
sec | 2002_01 | dssp | 1kni:A | 77.2 | 80 | 90 | 66 | 71 | 73 | 56 | 65.5 | 68 | 66 | 57 | 1.2 | 0.33 | 0.34 | 0.33 | 0.62 | 0.65 | 0.49 | 100.0 | 7.0 | 0.00 |
sec | 2002_01 | dssp | 1knz:A | 77.8 | 73 | 98 | 0 | 0 | 95 | 57 | 77.9 | 76 | 100 | 84 | 7.4 | 0.35 | 0.45 | 0.26 | 0.55 | 1.0 | 0.65 | 0.0 | 20.0 | 7.0 |
sec | 2002_01 | dssp | 1kov:A | 71.5 | 0 | 0 | 50 | 42 | 78 | 82 | 44.1 | 100 | 41 | 44 | 0.0 | 0.05 | 0.06 | 0.06 | 1.0 | 0.27 | 0.27 | 100.0 | 0.00 | 4.0 |
sec | 2002_01 | dssp | 1kpl:B | 80.9 | 87 | 90 | 0 | 0 | 63 | 61 | 71.9 | 80 | 0 | 50 | 1.5 | 0.23 | 0.25 | 0.22 | 0.55 | -0.01 | 0.50 | 100.0 | 2.0 | 1.0 |
sec | 2002_01 | dssp | THIS_month:psum | 76.9 | 63 | 74 | 44 | 49 | 78 | 70 | 70.6 | 75.0 | 72.4 | 68.9 | 1.7 | 0.35 | 0.35 | 0.35 | 0.67 | 0.68 | 0.54 | 86.1 | 6.9 | 3.8 |
sec | 2002_01 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_01 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |