METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2001_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_06 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_06 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_06 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2001_06 | dssp | THIS_month:psum | 73.3 | 72 | 75 | 38 | 48 | 76 | 66 | 72.3 | 72.7 | 77.4 | 68.5 | 4.6 | 0.31 | 0.32 | 0.30 | 0.57 | 0.68 | 0.52 | 86.6 | 7.8 | 5.7 |
sec | 2001_06 | dssp | 1e32:A | 73.3 | 69 | 89 | 54 | 73 | 85 | 65 | 68.1 | 75 | 66 | 62 | 1.3 | 0.34 | 0.33 | 0.36 | 0.69 | 0.55 | 0.52 | 0.0 | 7.0 | 5.0 |
sec | 2001_06 | dssp | 1f3y:A | 77.0 | 80 | 81 | 60 | 70 | 85 | 77 | 79.8 | 77 | 70 | 88 | 6.6 | 0.37 | 0.37 | 0.38 | 0.72 | 0.53 | 0.67 | 100.0 | 0.00 | 3.0 |
sec | 2001_06 | dssp | 1f7l:A | 78.8 | 87 | 83 | 70 | 85 | 76 | 65 | 77.0 | 80 | 82 | 63 | 5.0 | 0.42 | 0.42 | 0.42 | 0.75 | 0.67 | 0.60 | 100.0 | 1.0 | 5.0 |
sec | 2001_06 | dssp | 1f7t:A | 70.6 | 81 | 69 | 55 | 80 | 72 | 64 | 68.0 | 73 | 66 | 61 | 10.9 | 0.27 | 0.27 | 0.28 | 0.56 | 0.55 | 0.55 | 100.0 | 6.0 | 10.0 |
sec | 2001_06 | dssp | 1h9e:A | 82.1 | 88 | 65 | 0 | 0 | 79 | 93 | 78.3 | 100 | 100 | 71 | 0.0 | 0.33 | 0.35 | 0.32 | 0.63 | 1.0 | 0.63 | 100.0 | 10.0 | 0.00 |
sec | 2001_06 | dssp | 1h9f:A | 84.2 | 100 | 62 | 0 | 0 | 78 | 100 | 88.6 | 63 | 100 | 97 | 0.0 | 0.47 | 0.52 | 0.44 | 0.70 | 1.0 | 0.70 | 100.0 | 15.0 | 0.00 |
sec | 2001_06 | dssp | 1hf9:A | 85.4 | 82 | 100 | 0 | 0 | 100 | 50 | 97.6 | 100 | 100 | 83 | 0.0 | 0.43 | 0.51 | 0.35 | 0.64 | 1.0 | 0.64 | 100.0 | 14.0 | 0.00 |
sec | 2001_06 | dssp | 1hh0:A | 67.4 | 74 | 81 | 0 | 0 | 45 | 35 | 39.2 | 37 | 100 | 59 | 0.0 | 0.02 | 0.03 | 0.03 | 0.18 | 1.0 | 0.18 | 100.0 | 6.0 | 0.00 |
sec | 2001_06 | dssp | 1hs6:A | 69.7 | 66 | 86 | 62 | 64 | 78 | 59 | 68.1 | 70 | 74 | 61 | 4.9 | 0.27 | 0.28 | 0.28 | 0.61 | 0.52 | 0.48 | 100.0 | 9.0 | 0.00 |
sec | 2001_06 | dssp | 1i74:A | 82.5 | 82 | 91 | 70 | 83 | 88 | 75 | 84.9 | 88 | 83 | 81 | 1.6 | 0.47 | 0.47 | 0.48 | 0.78 | 0.71 | 0.68 | 100.0 | 3.0 | 2.0 |
sec | 2001_06 | dssp | 1ia9:A | 67.8 | 65 | 71 | 45 | 64 | 83 | 67 | 67.8 | 83 | 52 | 66 | 7.6 | 0.22 | 0.21 | 0.23 | 0.55 | 0.41 | 0.52 | 100.0 | 2.0 | 7.0 |
sec | 2001_06 | dssp | 1iaj:A | 62.8 | 73 | 65 | 40 | 55 | 69 | 64 | 62.9 | 85 | 39 | 60 | 7.5 | 0.17 | 0.17 | 0.18 | 0.54 | 0.31 | 0.40 | 100.0 | 3.0 | 7.0 |
sec | 2001_06 | dssp | 1iij:A | 57.1 | 60 | 100 | 0 | 0 | 50 | 50 | 67.1 | 80 | 100 | 35 | 14.2 | 0.26 | 0.34 | 0.19 | 0.54 | 1.0 | 0.30 | 100.0 | 28.0 | 28.0 |
sec | 2001_06 | dssp | 1im3:D | 60.0 | 0 | 0 | 58 | 85 | 68 | 52 | 62.6 | 0 | 62 | 68 | 8.4 | 0.12 | 0.14 | 0.11 | -0.06 | 0.40 | 0.35 | 0.0 | 9.0 | 19.0 |
sec | 2001_06 | dssp | 1j79:A | 81.6 | 80 | 93 | 67 | 69 | 88 | 77 | 75.3 | 80 | 67 | 73 | 1.7 | 0.46 | 0.46 | 0.47 | 0.79 | 0.62 | 0.67 | 100.0 | 5.0 | 0.00 |
sec | 2001_06 | dssp | THIS_month:psum | 73.3 | 72 | 75 | 38 | 48 | 76 | 66 | 72.3 | 72.7 | 77.4 | 68.5 | 4.6 | 0.31 | 0.32 | 0.30 | 0.57 | 0.68 | 0.52 | 86.6 | 7.8 | 5.7 |
sec | 2001_06 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_06 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_06 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |