METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2001_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_07 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2001_07 | dssp | THIS_month:psum | 80.2 | 81 | 84 | 41 | 46 | 79 | 73 | 73.8 | 79.3 | 65.8 | 64.5 | 0.93 | 0.42 | 0.42 | 0.42 | 0.68 | 0.67 | 0.59 | 94.4 | 6.4 | 3.8 |
sec | 2001_07 | dssp | 1dcj:A | 90.1 | 78 | 100 | 100 | 86 | 92 | 87 | 96.3 | 95 | 100 | 94 | 0.0 | 0.72 | 0.72 | 0.73 | 0.84 | 0.90 | 0.80 | 100.0 | 6.0 | 3.0 |
sec | 2001_07 | dssp | 1e44:B | 71.9 | 18 | 33 | 53 | 94 | 92 | 69 | 48.3 | 11 | 63 | 47 | 1.0 | 0.26 | 0.22 | 0.30 | 0.17 | 0.62 | 0.45 | 100.0 | 5.0 | 13.0 |
sec | 2001_07 | dssp | 1faz:A | 70.5 | 64 | 84 | 0 | 0 | 80 | 57 | 63.7 | 70 | 100 | 54 | 0.0 | 0.14 | 0.15 | 0.14 | 0.43 | 1.0 | 0.43 | 100.0 | 14.0 | 0.00 |
sec | 2001_07 | dssp | 1g7o:A | 79.1 | 88 | 83 | 68 | 68 | 65 | 73 | 74.8 | 77 | 71 | 70 | 0.4 | 0.35 | 0.35 | 0.36 | 0.65 | 0.66 | 0.54 | 100.0 | 3.0 | 0.00 |
sec | 2001_07 | dssp | 1gc5:A | 80.5 | 89 | 84 | 67 | 78 | 75 | 75 | 83.5 | 94 | 71 | 76 | 2.7 | 0.43 | 0.43 | 0.44 | 0.75 | 0.66 | 0.62 | 100.0 | 2.0 | 2.0 |
sec | 2001_07 | dssp | 1hr6:A | 82.7 | 89 | 89 | 64 | 81 | 82 | 76 | 79.5 | 92 | 72 | 69 | 0.0 | 0.50 | 0.50 | 0.52 | 0.81 | 0.68 | 0.64 | 100.0 | 0.00 | 3.0 |
sec | 2001_07 | dssp | 1hr7:A | 82.9 | 89 | 89 | 65 | 81 | 82 | 76 | 80.1 | 92 | 73 | 70 | 0.0 | 0.50 | 0.50 | 0.52 | 0.81 | 0.68 | 0.64 | 100.0 | 0.00 | 3.0 |
sec | 2001_07 | dssp | 1hr8:A | 85.0 | 91 | 88 | 69 | 87 | 85 | 80 | 79.3 | 90 | 71 | 72 | 0.3 | 0.54 | 0.53 | 0.55 | 0.83 | 0.73 | 0.70 | 100.0 | 1.0 | 3.0 |
sec | 2001_07 | dssp | 1hr9:A | 85.0 | 91 | 88 | 70 | 87 | 85 | 81 | 79.8 | 90 | 72 | 73 | 0.3 | 0.53 | 0.53 | 0.55 | 0.82 | 0.74 | 0.70 | 100.0 | 1.0 | 3.0 |
sec | 2001_07 | dssp | 1i3j:A | 72.9 | 58 | 100 | 81 | 33 | 79 | 84 | 63.0 | 61 | 75 | 61 | 7.2 | 0.36 | 0.38 | 0.35 | 0.69 | 0.42 | 0.60 | 100.0 | 13.0 | 16.0 |
sec | 2001_07 | dssp | 1ijx:A | 74.4 | 78 | 84 | 0 | 0 | 85 | 70 | 52.9 | 69 | 0 | 49 | 0.0 | 0.33 | 0.29 | 0.38 | 0.69 | -0.04 | 0.49 | 100.0 | 3.0 | 8.0 |
sec | 2001_07 | dssp | 1ijy:A | 81.1 | 78 | 93 | 0 | 0 | 92 | 76 | 65.7 | 82 | 0 | 59 | 0.0 | 0.42 | 0.39 | 0.46 | 0.76 | -0.03 | 0.63 | 100.0 | 6.0 | 4.0 |
sec | 2001_07 | dssp | 1jei:A | 77.4 | 90 | 64 | 0 | 0 | 69 | 92 | 88.9 | 90 | 100 | 87 | 0.0 | 0.27 | 0.28 | 0.27 | 0.57 | 1.0 | 0.57 | 100.0 | 15.0 | 0.00 |
sec | 2001_07 | dssp | 1jek:A | 97.5 | 97 | 100 | 0 | 0 | 100 | 66 | 98.8 | 100 | 100 | 75 | 0.0 | 0.66 | 0.76 | 0.57 | 0.80 | 1.0 | 0.80 | 100.0 | 2.0 | 0.00 |
sec | 2001_07 | dssp | 1jek:B | 91.2 | 90 | 100 | 0 | 0 | 100 | 40 | 66.7 | 67 | 100 | 50 | 0.0 | 0.42 | 0.56 | 0.30 | 0.60 | 1.0 | 0.60 | 100.0 | 8.0 | 0.00 |
sec | 2001_07 | dssp | 1jfi:A | 78.3 | 100 | 76 | 0 | 0 | 45 | 90 | 80.8 | 100 | 0 | 52 | 1.6 | 0.34 | 0.26 | 0.44 | 0.58 | 1.0 | 0.53 | 100.0 | 20.0 | 3.0 |
sec | 2001_07 | dssp | 1jfy:A | 67.8 | 98 | 73 | 40 | 56 | 50 | 64 | 55.5 | 73 | 37 | 43 | 3.4 | 0.33 | 0.32 | 0.35 | 0.72 | 0.35 | 0.36 | 0.0 | 13.0 | 6.0 |
sec | 2001_07 | dssp | 1jg8:A | 77.0 | 77 | 84 | 76 | 90 | 77 | 63 | 71.2 | 75 | 80 | 60 | 0.0 | 0.42 | 0.42 | 0.43 | 0.65 | 0.79 | 0.52 | 100.0 | 4.0 | 2.0 |
sec | 2001_07 | dssp | THIS_month:psum | 80.2 | 81 | 84 | 41 | 46 | 79 | 73 | 73.8 | 79.3 | 65.8 | 64.5 | 0.93 | 0.42 | 0.42 | 0.42 | 0.68 | 0.67 | 0.59 | 94.4 | 6.4 | 3.8 |
sec | 2001_07 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |