METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2000_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_07 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_07 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2000_07 | dssp | THIS_month:psum | 77.3 | 74 | 78 | 49 | 56 | 74 | 70 | 73.2 | 72.6 | 70.5 | 68.5 | 2.1 | 0.35 | 0.35 | 0.36 | 0.65 | 0.67 | 0.54 | 77.7 | 5 | 4 |
sec | 2000_07 | dssp | 1c01:A | 61.8 | 0 | 0 | 62 | 69 | 65 | 76 | 66.4 | 0 | 69 | 68 | 6.5 | 0.16 | 0.18 | 0.14 | -0.08 | 0.46 | 0.37 | 100.0 | 11.0 | 3.0 |
sec | 2000_07 | dssp | 1c0n:A | 80.2 | 82 | 84 | 74 | 85 | 80 | 74 | 75.6 | 84 | 76 | 66 | 0.2 | 0.45 | 0.45 | 0.46 | 0.72 | 0.75 | 0.60 | 100.0 | 0.00 | 2.0 |
sec | 2000_07 | dssp | 1c7n:A | 82.0 | 81 | 95 | 75 | 69 | 84 | 74 | 74.9 | 85 | 75 | 63 | 0.5 | 0.48 | 0.49 | 0.49 | 0.80 | 0.67 | 0.64 | 100.0 | 6.0 | 1.0 |
sec | 2000_07 | dssp | 1c8u:A | 78.9 | 90 | 68 | 64 | 93 | 86 | 76 | 78.9 | 96 | 68 | 82 | 4.2 | 0.43 | 0.44 | 0.44 | 0.73 | 0.68 | 0.66 | 100.0 | 6.0 | 11.0 |
sec | 2000_07 | dssp | 1dk8:A | 78.2 | 86 | 80 | 0 | 0 | 64 | 72 | 83.4 | 86 | 100 | 78 | 0.0 | 0.21 | 0.21 | 0.22 | 0.52 | 1.0 | 0.52 | 100.0 | 4.0 | 0.00 |
sec | 2000_07 | dssp | 1dow:A | 89.3 | 93 | 93 | 0 | 0 | 56 | 60 | 72.8 | 73 | 100 | 65 | 0.9 | 0.24 | 0.25 | 0.23 | 0.49 | 1.0 | 0.52 | 100.0 | 0.00 | 0.00 |
sec | 2000_07 | dssp | 1dow:B | 81.2 | 85 | 85 | 0 | 0 | 72 | 72 | 60.7 | 64 | 100 | 52 | 0.0 | 0.26 | 0.27 | 0.27 | 0.58 | 1.0 | 0.58 | 100.0 | 0.00 | 0.00 |
sec | 2000_07 | dssp | 1dq3:A | 76.9 | 80 | 87 | 70 | 79 | 80 | 66 | 79.2 | 86 | 75 | 76 | 3.7 | 0.39 | 0.39 | 0.40 | 0.76 | 0.62 | 0.58 | 0.0 | 2.0 | 3.0 |
sec | 2000_07 | dssp | 1dqp:A | 69.6 | 78 | 76 | 67 | 64 | 63 | 66 | 72.1 | 80 | 68 | 66 | 2.1 | 0.28 | 0.29 | 0.28 | 0.64 | 0.55 | 0.41 | 100.0 | 0.00 | 1.0 |
sec | 2000_07 | dssp | 1dqz:A | 81.8 | 73 | 92 | 82 | 82 | 88 | 75 | 79.5 | 67 | 92 | 87 | 0.0 | 0.49 | 0.49 | 0.51 | 0.73 | 0.79 | 0.64 | 100.0 | 8.0 | 0.00 |
sec | 2000_07 | dssp | 1ds1:A | 76.8 | 74 | 90 | 50 | 76 | 90 | 71 | 67.9 | 82 | 52 | 65 | 1.5 | 0.39 | 0.38 | 0.42 | 0.75 | 0.53 | 0.59 | 100.0 | 5.0 | 7.0 |
sec | 2000_07 | dssp | 1ds9:A | 58.1 | 77 | 52 | 19 | 100 | 60 | 60 | 54.6 | 76 | 29 | 49 | 7.0 | 0.14 | 0.12 | 0.16 | 0.37 | 0.40 | 0.29 | 0.0 | 16.0 | 16.0 |
sec | 2000_07 | dssp | 1dus:A | 85.1 | 89 | 86 | 74 | 95 | 90 | 77 | 94.6 | 98 | 92 | 93 | 1.5 | 0.56 | 0.56 | 0.57 | 0.83 | 0.78 | 0.72 | 0.0 | 1.0 | 7.0 |
sec | 2000_07 | dssp | 1dvo:A | 78.9 | 90 | 85 | 0 | 0 | 73 | 62 | 80.3 | 97 | 0 | 60 | 3.2 | 0.27 | 0.24 | 0.32 | 0.61 | 1.0 | 0.55 | 0.0 | 3.0 | 7.0 |
sec | 2000_07 | dssp | 1e2t:A | 78.1 | 84 | 81 | 79 | 70 | 73 | 81 | 81.3 | 89 | 76 | 78 | 2.1 | 0.40 | 0.41 | 0.40 | 0.75 | 0.65 | 0.60 | 0.0 | 1.0 | 3.0 |
sec | 2000_07 | dssp | 1ej6:D | 74.6 | 77 | 88 | 60 | 56 | 75 | 67 | 66.1 | 74 | 60 | 57 | 0.7 | 0.34 | 0.35 | 0.34 | 0.69 | 0.51 | 0.49 | 100.0 | 5.0 | 0.00 |
sec | 2000_07 | dssp | 1evl:A | 75.8 | 76 | 88 | 70 | 81 | 79 | 62 | 75.4 | 80 | 73 | 71 | 0.9 | 0.40 | 0.40 | 0.40 | 0.72 | 0.67 | 0.52 | 100.0 | 5.0 | 3.0 |
sec | 2000_07 | dssp | 1exk:A | 67.1 | 0 | 0 | 62 | 57 | 77 | 71 | 48.6 | 0 | 73 | 43 | 0.0 | 0.14 | 0.12 | 0.16 | 1.0 | 0.41 | 0.28 | 100.0 | 7.0 | 2.0 |
sec | 2000_07 | dssp | 1f02:T | 63.6 | 91 | 76 | 14 | 100 | 47 | 36 | 52.8 | 74 | 21 | 34 | 1.5 | 0.33 | 0.28 | 0.38 | 0.61 | 0.34 | 0.17 | 0.0 | 10.0 | 18.0 |
sec | 2000_07 | dssp | 1f0j:A | 80.9 | 82 | 89 | 0 | 0 | 80 | 74 | 75.1 | 78 | 0 | 69 | 2.5 | 0.31 | 0.33 | 0.29 | 0.62 | -0.01 | 0.64 | 100.0 | 5.0 | 2.0 |
sec | 2000_07 | dssp | 1f43:A | 93.4 | 96 | 90 | 0 | 0 | 90 | 96 | 98.6 | 100 | 100 | 97 | 0.0 | 0.66 | 0.66 | 0.66 | 0.87 | 1.0 | 0.87 | 100.0 | 3.0 | 0.00 |
sec | 2000_07 | dssp | 1f8x:A | 62.2 | 39 | 84 | 72 | 41 | 83 | 64 | 58.3 | 40 | 63 | 76 | 12.8 | 0.20 | 0.20 | 0.20 | 0.41 | 0.43 | 0.51 | 100.0 | 23.0 | 11.0 |
sec | 2000_07 | dssp | 1fao:A | 87.0 | 84 | 100 | 88 | 86 | 86 | 82 | 95.0 | 84 | 97 | 97 | 1.0 | 0.59 | 0.59 | 0.60 | 0.90 | 0.77 | 0.74 | 100.0 | 3.0 | 1.0 |
sec | 2000_07 | dssp | 1qjv:A | 74.6 | 60 | 72 | 79 | 68 | 73 | 80 | 65.1 | 41 | 61 | 71 | 1.7 | 0.27 | 0.28 | 0.28 | 0.62 | 0.55 | 0.52 | 100.0 | 1.0 | 6.0 |
sec | 2000_07 | dssp | 1qo2:A | 79.7 | 74 | 88 | 88 | 86 | 80 | 67 | 84.7 | 79 | 98 | 81 | 1.2 | 0.47 | 0.47 | 0.47 | 0.68 | 0.83 | 0.59 | 100.0 | 7.0 | 0.00 |
sec | 2000_07 | dssp | 1qu7:A | 91.2 | 95 | 95 | 0 | 0 | 41 | 53 | 56.1 | 57 | 100 | 41 | 1.7 | 0.17 | 0.18 | 0.16 | 0.36 | 1.0 | 0.43 | 100.0 | 0.00 | 1.0 |
sec | 2000_07 | dssp | 1thf:D | 81.0 | 86 | 95 | 78 | 69 | 77 | 77 | 79.3 | 91 | 88 | 65 | 1.1 | 0.49 | 0.50 | 0.49 | 0.85 | 0.65 | 0.62 | 100.0 | 3.0 | 3.0 |
sec | 2000_07 | dssp | THIS_month:psum | 77.3 | 74 | 78 | 49 | 56 | 74 | 70 | 73.2 | 72.6 | 70.5 | 68.5 | 2.1 | 0.35 | 0.35 | 0.36 | 0.65 | 0.67 | 0.54 | 77.7 | 5 | 4 |
sec | 2000_07 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_07 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_07 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |