METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2002_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_04 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2002_04 | dssp | THIS_month:psum | 76.4 | 67 | 70 | 44 | 53 | 76 | 73 | 71.1 | 68.7 | 76.1 | 66.6 | 1.2 | 0.38 | 0.37 | 0.39 | 0.64 | 0.68 | 0.54 | 86.3 | 7.6 | 5.8 |
sec | 2002_04 | dssp | 1ich:A | 83.9 | 82 | 94 | 0 | 0 | 86 | 76 | 86.9 | 85 | 100 | 89 | 5.7 | 0.41 | 0.49 | 0.35 | 0.64 | 1.0 | 0.74 | 0.0 | 9.0 | 5.0 |
sec | 2002_04 | dssp | 1icz:A | 48.2 | 75 | 30 | 26 | 12 | 43 | 82 | 37.6 | 57 | 16 | 35 | 2.4 | 0.05 | 0.06 | 0.04 | 0.26 | 0.10 | 0.14 | 100.0 | 28.0 | 6.0 |
sec | 2002_04 | dssp | 1jki:A | 79.6 | 80 | 83 | 64 | 93 | 88 | 72 | 75.0 | 80 | 69 | 74 | 2.4 | 0.44 | 0.43 | 0.46 | 0.72 | 0.71 | 0.65 | 0.0 | 0.00 | 8.0 |
sec | 2002_04 | dssp | 1jww:A | 86.2 | 95 | 95 | 80 | 77 | 83 | 85 | 92.0 | 100 | 91 | 87 | 0.0 | 0.61 | 0.62 | 0.61 | 0.93 | 0.71 | 0.72 | 100.0 | 0.00 | 1.0 |
sec | 2002_04 | dssp | 1jyh:A | 83.2 | 77 | 87 | 83 | 92 | 85 | 73 | 85.6 | 80 | 95 | 78 | 0.0 | 0.53 | 0.53 | 0.54 | 0.77 | 0.81 | 0.65 | 100.0 | 2.0 | 3.0 |
sec | 2002_04 | dssp | 1k1v:A | 95.1 | 100 | 93 | 0 | 0 | 84 | 100 | 83.8 | 83 | 100 | 84 | 0.0 | 0.73 | 0.71 | 0.77 | 0.88 | 1.0 | 0.88 | 100.0 | 4.0 | 0.00 |
sec | 2002_04 | dssp | 1k2e:A | 71.1 | 84 | 97 | 64 | 69 | 66 | 55 | 66.4 | 73 | 66 | 57 | 0.0 | 0.43 | 0.43 | 0.44 | 0.87 | 0.48 | 0.38 | 100.0 | 3.0 | 2.0 |
sec | 2002_04 | dssp | 1k3b:A | 78.2 | 0 | 0 | 83 | 81 | 78 | 79 | 79.6 | 0 | 94 | 70 | 4.2 | 0.28 | 0.28 | 0.29 | -0.03 | 0.60 | 0.63 | 100.0 | 0.00 | 0.00 |
sec | 2002_04 | dssp | 1k3k:A | 83.6 | 94 | 81 | 0 | 0 | 65 | 87 | 81.6 | 79 | 100 | 85 | 0.0 | 0.34 | 0.33 | 0.37 | 0.64 | 1.0 | 0.64 | 100.0 | 9.0 | 0.00 |
sec | 2002_04 | dssp | 1k81:A | 69.4 | 0 | 0 | 42 | 100 | 100 | 60 | 62.5 | 100 | 52 | 73 | 0.0 | 0.28 | 0.25 | 0.32 | 1.0 | 0.50 | 0.50 | 100.0 | 0.00 | 30.0 |
sec | 2002_04 | dssp | 1k8b:A | 75.0 | 95 | 86 | 44 | 100 | 84 | 52 | 69.9 | 100 | 50 | 48 | 1.9 | 0.50 | 0.49 | 0.52 | 0.84 | 0.58 | 0.52 | 100.0 | 3.0 | 19.0 |
sec | 2002_04 | dssp | 1ksk:A | 77.3 | 84 | 80 | 81 | 67 | 71 | 83 | 79.2 | 91 | 80 | 73 | 1.2 | 0.41 | 0.42 | 0.41 | 0.77 | 0.63 | 0.57 | 100.0 | 1.0 | 5.0 |
sec | 2002_04 | dssp | 1ku3:A | 85.2 | 97 | 81 | 0 | 0 | 68 | 94 | 74.6 | 100 | 100 | 48 | 0.0 | 0.42 | 0.41 | 0.45 | 0.70 | 1.0 | 0.70 | 100.0 | 11.0 | 0.00 |
sec | 2002_04 | dssp | 1kv8:B | 84.2 | 78 | 96 | 88 | 84 | 89 | 71 | 87.2 | 84 | 97 | 84 | 1.3 | 0.54 | 0.55 | 0.54 | 0.77 | 0.82 | 0.69 | 100.0 | 8.0 | 0.00 |
sec | 2002_04 | dssp | 1kxl:A | 69.0 | 89 | 54 | 68 | 61 | 60 | 87 | 50.8 | 70 | 61 | 42 | 3.7 | 0.27 | 0.29 | 0.27 | 0.57 | 0.56 | 0.50 | 100.0 | 15.0 | 2.0 |
sec | 2002_04 | dssp | 1ky9:B | 64.7 | 60 | 85 | 38 | 100 | 95 | 52 | 72.5 | 81 | 57 | 83 | 0.0 | 0.35 | 0.31 | 0.40 | 0.66 | 0.51 | 0.43 | 100.0 | 5.0 | 25.0 |
sec | 2002_04 | dssp | 1l0o:A | 72.3 | 53 | 93 | 91 | 64 | 79 | 67 | 72.0 | 64 | 83 | 72 | 5.6 | 0.35 | 0.36 | 0.36 | 0.60 | 0.67 | 0.55 | 0.0 | 16.0 | 9.0 |
sec | 2002_04 | dssp | 1l0o:C | 84.2 | 88 | 100 | 0 | 0 | 78 | 64 | 85.4 | 100 | 0 | 59 | 0.0 | 0.56 | 0.62 | 0.50 | 0.81 | -0.03 | 0.60 | 100.0 | 8.0 | 3.0 |
sec | 2002_04 | dssp | 1l3y:A | 82.9 | 0 | 0 | 62 | 100 | 100 | 80 | 86.6 | 0 | 87 | 98 | 0.0 | 0.47 | 0.30 | 0.65 | 1.0 | 0.75 | 0.57 | 100.0 | 9.0 | 7.0 |
sec | 2002_04 | dssp | 1l7j:A | 74.9 | 19 | 83 | 74 | 81 | 84 | 69 | 66.9 | 19 | 77 | 65 | 0.0 | 0.29 | 0.27 | 0.32 | 0.38 | 0.62 | 0.50 | 100.0 | 5.0 | 3.0 |
sec | 2002_04 | dssp | 1l8c:B | 64.7 | 42 | 53 | 0 | 0 | 78 | 69 | 47.4 | 42 | 100 | 50 | 0.0 | 0.03 | 0.03 | 0.04 | 0.21 | 1.0 | 0.21 | 100.0 | 7.0 | 0.00 |
sec | 2002_04 | dssp | 1l8m:A | 69.6 | 97 | 70 | 0 | 0 | 11 | 64 | 21.5 | 25 | 100 | 13 | 0.0 | 0.05 | 0.03 | 0.08 | 0.20 | 1.0 | 0.17 | 100.0 | 25.0 | 0.00 |
sec | 2002_04 | dssp | THIS_month:psum | 76.4 | 67 | 70 | 44 | 53 | 76 | 73 | 71.1 | 68.7 | 76.1 | 66.6 | 1.2 | 0.38 | 0.37 | 0.39 | 0.64 | 0.68 | 0.54 | 86.3 | 7.6 | 5.8 |
sec | 2002_04 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |