METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2001_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_01 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_01 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_01 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2001_01 | dssp | THIS_month:psum | 78.6 | 65 | 71 | 48 | 45 | 78 | 72 | 72.7 | 74.5 | 72.6 | 70.2 | 2.8 | 0.36 | 0.38 | 0.35 | 0.72 | 0.65 | 0.55 | 87.5 | 7.0 | 5 |
sec | 2001_01 | dssp | 1dqe:A | 82.5 | 86 | 90 | 0 | 0 | 78 | 83 | 75.6 | 83 | 0 | 67 | 3.6 | 0.39 | 0.42 | 0.37 | 0.71 | -0.03 | 0.70 | 0.0 | 2.0 | 4.0 |
sec | 2001_01 | dssp | 1emx:A | 63.3 | 0 | 0 | 50 | 14 | 64 | 94 | 53.4 | 100 | 7 | 55 | 0.0 | 0.04 | 0.08 | 0.02 | 1.0 | 0.16 | 0.07 | 100.0 | 13.0 | 16.0 |
sec | 2001_01 | dssp | 1ep1:B | 72.4 | 80 | 67 | 67 | 84 | 73 | 67 | 74.7 | 77 | 78 | 70 | 0.0 | 0.36 | 0.37 | 0.37 | 0.66 | 0.63 | 0.44 | 100.0 | 3.0 | 7.0 |
sec | 2001_01 | dssp | 1f9a:A | 81.1 | 84 | 89 | 79 | 61 | 77 | 81 | 87.3 | 92 | 96 | 78 | 2.4 | 0.44 | 0.46 | 0.44 | 0.77 | 0.63 | 0.65 | 100.0 | 2.0 | 4.0 |
sec | 2001_01 | dssp | 1fc6:A | 81.6 | 80 | 89 | 79 | 84 | 83 | 76 | 74.0 | 83 | 77 | 65 | 0.0 | 0.49 | 0.49 | 0.50 | 0.78 | 0.75 | 0.63 | 100.0 | 2.0 | 1.0 |
sec | 2001_01 | dssp | 1fe6:A | 51.9 | 48 | 100 | 0 | 0 | 100 | 18 | 37.0 | 36 | 100 | 45 | 23.0 | 0.19 | 0.33 | 0.07 | 0.22 | 1.0 | 0.37 | 100.0 | 48.0 | 23.0 |
sec | 2001_01 | dssp | 1foe:A | 81.0 | 86 | 86 | 86 | 81 | 68 | 71 | 75.4 | 75 | 79 | 73 | 0.0 | 0.45 | 0.46 | 0.46 | 0.69 | 0.81 | 0.56 | 100.0 | 0.00 | 0.00 |
sec | 2001_01 | dssp | 1fqt:A | 81.7 | 0 | 0 | 79 | 82 | 87 | 80 | 80.7 | 0 | 82 | 83 | 0.9 | 0.33 | 0.30 | 0.35 | 1.0 | 0.66 | 0.65 | 100.0 | 2.0 | 1.0 |
sec | 2001_01 | dssp | 1fy2:A | 80.6 | 92 | 79 | 82 | 69 | 71 | 87 | 82.9 | 94 | 90 | 73 | 0.6 | 0.46 | 0.48 | 0.46 | 0.77 | 0.70 | 0.63 | 100.0 | 5.0 | 3.0 |
sec | 2001_01 | dssp | 1g1i:A | 97.7 | 97 | 100 | 0 | 0 | 100 | 83 | 74.1 | 72 | 100 | 100 | 0.0 | 0.77 | 0.82 | 0.73 | 0.90 | 1.0 | 0.90 | 100.0 | 2.0 | 0.00 |
sec | 2001_01 | dssp | 1g2c:A | 84.0 | 86 | 95 | 0 | 0 | 50 | 25 | 61.4 | 63 | 100 | 29 | 0.0 | 0.08 | 0.10 | 0.06 | 0.27 | 1.0 | 0.27 | 100.0 | 8.0 | 0.00 |
sec | 2001_01 | dssp | 1g2c:B | 90.0 | 96 | 90 | 0 | 0 | 72 | 88 | 95.0 | 100 | 100 | 81 | 0.0 | 0.47 | 0.45 | 0.49 | 0.74 | 1.0 | 0.74 | 100.0 | 5.0 | 0.00 |
sec | 2001_01 | dssp | 1g4u:S | 81.7 | 82 | 90 | 81 | 80 | 80 | 72 | 76.7 | 78 | 88 | 70 | 0.0 | 0.49 | 0.49 | 0.49 | 0.76 | 0.77 | 0.61 | 100.0 | 4.0 | 0.00 |
sec | 2001_01 | dssp | 1g6o:A | 86.1 | 88 | 88 | 84 | 86 | 85 | 83 | 88.6 | 93 | 89 | 83 | 1.5 | 0.55 | 0.56 | 0.56 | 0.80 | 0.81 | 0.74 | 0.0 | 0.00 | 0.00 |
sec | 2001_01 | dssp | 1g73:C | 61.8 | 44 | 77 | 55 | 23 | 78 | 71 | 62.0 | 47 | 47 | 78 | 13.4 | 0.19 | 0.20 | 0.18 | 0.40 | 0.25 | 0.50 | 100.0 | 17.0 | 13.0 |
sec | 2001_01 | dssp | 1hx2:A | 81.7 | 0 | 0 | 33 | 57 | 93 | 84 | 65.2 | 100 | 29 | 74 | 0.0 | 0.10 | 0.09 | 0.13 | 1.0 | 0.33 | 0.33 | 100.0 | 0.00 | 8.0 |
sec | 2001_01 | dssp | THIS_month:psum | 78.6 | 65 | 71 | 48 | 45 | 78 | 72 | 72.7 | 74.5 | 72.6 | 70.2 | 2.8 | 0.36 | 0.38 | 0.35 | 0.72 | 0.65 | 0.55 | 87.5 | 7.0 | 5 |
sec | 2001_01 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_01 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_01 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |