METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2000_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_08 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2000_08 | dssp | THIS_month:psum | 78.7 | 67 | 77 | 64 | 68 | 81 | 75 | 75.3 | 75.9 | 66.4 | 71.0 | 2.7 | 0.39 | 0.38 | 0.39 | 0.67 | 0.57 | 0.59 | 70.5 | 4.0 | 4.8 |
sec | 2000_08 | dssp | 1c3g:A | 75.9 | 25 | 66 | 77 | 75 | 84 | 76 | 71.4 | 25 | 81 | 70 | 5.2 | 0.29 | 0.28 | 0.32 | 0.37 | 0.57 | 0.62 | 100.0 | 5.0 | 1.0 |
sec | 2000_08 | dssp | 1crz:A | 78.4 | 7 | 100 | 87 | 78 | 84 | 78 | 81.5 | 10 | 90 | 87 | 2.9 | 0.34 | 0.30 | 0.39 | 0.26 | 0.68 | 0.62 | 0.0 | 8.0 | 5.0 |
sec | 2000_08 | dssp | 1de6:A | 77.2 | 88 | 83 | 44 | 52 | 73 | 75 | 69.8 | 92 | 47 | 55 | 2.1 | 0.34 | 0.34 | 0.35 | 0.72 | 0.42 | 0.57 | 100.0 | 2.0 | 1.0 |
sec | 2000_08 | dssp | 1dkq:A | 79.5 | 77 | 88 | 64 | 80 | 87 | 72 | 69.6 | 81 | 69 | 58 | 1.2 | 0.41 | 0.40 | 0.42 | 0.71 | 0.67 | 0.62 | 100.0 | 5.0 | 3.0 |
sec | 2000_08 | dssp | 1eej:A | 85.2 | 89 | 92 | 76 | 88 | 86 | 77 | 82.9 | 90 | 73 | 81 | 0.0 | 0.57 | 0.56 | 0.58 | 0.85 | 0.77 | 0.69 | 0.0 | 1.0 | 3.0 |
sec | 2000_08 | dssp | 1eem:A | 89.5 | 90 | 93 | 80 | 89 | 90 | 84 | 84.5 | 89 | 85 | 77 | 0.4 | 0.59 | 0.59 | 0.60 | 0.83 | 0.83 | 0.79 | 100.0 | 1.0 | 0.00 |
sec | 2000_08 | dssp | 1eg3:A | 81.5 | 84 | 91 | 33 | 46 | 88 | 72 | 82.7 | 91 | 33 | 78 | 3.8 | 0.38 | 0.38 | 0.39 | 0.72 | 0.35 | 0.69 | 100.0 | 4.0 | 2.0 |
sec | 2000_08 | dssp | 1ej0:A | 88.3 | 89 | 96 | 72 | 100 | 100 | 76 | 97.2 | 100 | 92 | 98 | 1.1 | 0.67 | 0.67 | 0.69 | 0.89 | 0.80 | 0.80 | 0.0 | 2.0 | 7.0 |
sec | 2000_08 | dssp | 1emw:A | 92.0 | 100 | 84 | 100 | 84 | 86 | 100 | 98.3 | 100 | 97 | 98 | 0.0 | 0.75 | 0.77 | 0.73 | 0.89 | 0.89 | 0.85 | 100.0 | 3.0 | 4.0 |
sec | 2000_08 | dssp | 1eok:A | 67.0 | 51 | 89 | 69 | 47 | 77 | 66 | 62.1 | 62 | 71 | 59 | 3.1 | 0.24 | 0.24 | 0.25 | 0.56 | 0.48 | 0.41 | 100.0 | 15.0 | 7.0 |
sec | 2000_08 | dssp | 1evx:A | 58.6 | 13 | 30 | 58 | 52 | 75 | 65 | 55.4 | 20 | 75 | 56 | 9.2 | 0.10 | 0.10 | 0.11 | 0.09 | 0.33 | 0.36 | 100.0 | 10.0 | 3.0 |
sec | 2000_08 | dssp | 1ew4:A | 86.8 | 100 | 91 | 73 | 89 | 87 | 80 | 91.8 | 100 | 85 | 90 | 0.9 | 0.63 | 0.64 | 0.64 | 0.93 | 0.73 | 0.74 | 100.0 | 2.0 | 5.0 |
sec | 2000_08 | dssp | 1ezg:A | 76.8 | 0 | 0 | 10 | 50 | 96 | 78 | 32.1 | 100 | 15 | 36 | 0.0 | 0.03 | 0.02 | 0.04 | 1.0 | 0.14 | 0.14 | 100.0 | 0.00 | 18.0 |
sec | 2000_08 | dssp | 1f0k:A | 81.5 | 85 | 84 | 80 | 81 | 77 | 77 | 80.4 | 81 | 84 | 77 | 1.4 | 0.45 | 0.45 | 0.46 | 0.71 | 0.77 | 0.63 | 100.0 | 0.00 | 0.00 |
sec | 2000_08 | dssp | 1f2t:B | 72.0 | 85 | 72 | 51 | 91 | 71 | 61 | 75.9 | 91 | 58 | 68 | 8.3 | 0.31 | 0.30 | 0.32 | 0.59 | 0.60 | 0.52 | 0.0 | 8.0 | 12.0 |
sec | 2000_08 | dssp | 1fgx:A | 74.6 | 77 | 78 | 67 | 62 | 76 | 78 | 71.2 | 73 | 67 | 71 | 1.1 | 0.34 | 0.34 | 0.34 | 0.70 | 0.54 | 0.51 | 100.0 | 0.00 | 1.0 |
sec | 2000_08 | dssp | 1qkr:A | 73.5 | 83 | 87 | 50 | 4 | 47 | 65 | 74.9 | 86 | 8 | 49 | 6.0 | 0.18 | 0.21 | 0.16 | 0.51 | 0.12 | 0.43 | 0.0 | 3.0 | 11.0 |
sec | 2000_08 | dssp | THIS_month:psum | 78.7 | 67 | 77 | 64 | 68 | 81 | 75 | 75.3 | 75.9 | 66.4 | 71.0 | 2.7 | 0.39 | 0.38 | 0.39 | 0.67 | 0.57 | 0.59 | 70.5 | 4.0 | 4.8 |
sec | 2000_08 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |