METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2001_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_08 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_08 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2001_08 | dssp | THIS_month:psum | 75.0 | 76 | 69 | 47 | 59 | 73 | 75 | 70.8 | 75.2 | 64.5 | 67.2 | 2.9 | 0.36 | 0.35 | 0.38 | 0.69 | 0.62 | 0.53 | 78.2 | 8.0 | 5 |
sec | 2001_08 | dssp | 1e5r:A | 73.3 | 84 | 84 | 40 | 66 | 75 | 64 | 66.7 | 61 | 50 | 84 | 0.0 | 0.36 | 0.35 | 0.38 | 0.72 | 0.44 | 0.46 | 100.0 | 0.00 | 6.0 |
sec | 2001_08 | dssp | 1e5s:A | 73.3 | 84 | 84 | 40 | 66 | 75 | 64 | 66.7 | 61 | 50 | 84 | 0.0 | 0.36 | 0.35 | 0.38 | 0.72 | 0.44 | 0.46 | 100.0 | 0.00 | 6.0 |
sec | 2001_08 | dssp | 1e6f:A | 75.2 | 0 | 0 | 85 | 73 | 72 | 77 | 72.3 | 0 | 81 | 71 | 0.0 | 0.28 | 0.25 | 0.31 | 1.0 | 0.60 | 0.50 | 0.0 | 4.0 | 7.0 |
sec | 2001_08 | dssp | 1e89:A | 78.2 | 83 | 77 | 63 | 91 | 79 | 75 | 77.1 | 82 | 71 | 74 | 2.2 | 0.39 | 0.39 | 0.41 | 0.67 | 0.71 | 0.60 | 100.0 | 3.0 | 5.0 |
sec | 2001_08 | dssp | 1fg3:A | 82.2 | 84 | 81 | 87 | 84 | 78 | 81 | 81.7 | 87 | 95 | 73 | 0.2 | 0.48 | 0.49 | 0.48 | 0.71 | 0.83 | 0.64 | 100.0 | 1.0 | 0.00 |
sec | 2001_08 | dssp | 1fm2:B | 72.9 | 70 | 80 | 54 | 84 | 86 | 66 | 65.2 | 76 | 62 | 60 | 0.7 | 0.34 | 0.32 | 0.36 | 0.68 | 0.58 | 0.50 | 100.0 | 3.0 | 10.0 |
sec | 2001_08 | dssp | 1g2r:A | 78.7 | 97 | 71 | 38 | 100 | 78 | 85 | 74.8 | 84 | 44 | 79 | 7.4 | 0.44 | 0.41 | 0.48 | 0.69 | 0.58 | 0.71 | 100.0 | 14.0 | 11.0 |
sec | 2001_08 | dssp | 1g8p:A | 70.7 | 72 | 86 | 45 | 77 | 78 | 54 | 68.5 | 79 | 52 | 57 | 0.9 | 0.28 | 0.28 | 0.30 | 0.59 | 0.54 | 0.43 | 100.0 | 8.0 | 5.0 |
sec | 2001_08 | dssp | 1h70:A | 74.9 | 65 | 88 | 77 | 74 | 79 | 69 | 71.6 | 69 | 81 | 67 | 0.3 | 0.38 | 0.38 | 0.39 | 0.67 | 0.67 | 0.51 | 100.0 | 7.0 | 1.0 |
sec | 2001_08 | dssp | 1h75:A | 84.2 | 89 | 96 | 70 | 80 | 87 | 77 | 88.6 | 100 | 76 | 84 | 0.0 | 0.56 | 0.56 | 0.57 | 0.88 | 0.68 | 0.68 | 0.0 | 2.0 | 2.0 |
sec | 2001_08 | dssp | 1h7y:A | 78.6 | 86 | 80 | 80 | 61 | 73 | 91 | 79.9 | 88 | 70 | 80 | 4.7 | 0.42 | 0.43 | 0.41 | 0.77 | 0.58 | 0.67 | 100.0 | 1.0 | 7.0 |
sec | 2001_08 | dssp | 1hi9:A | 78.8 | 88 | 80 | 77 | 75 | 72 | 79 | 71.4 | 90 | 87 | 55 | 1.0 | 0.44 | 0.45 | 0.44 | 0.76 | 0.69 | 0.58 | 100.0 | 3.0 | 0.00 |
sec | 2001_08 | dssp | 1hqb:A | 75.0 | 100 | 62 | 0 | 0 | 56 | 100 | 67.2 | 90 | 100 | 55 | 0.0 | 0.36 | 0.35 | 0.38 | 0.59 | 1.0 | 0.59 | 0.0 | 25.0 | 0.00 |
sec | 2001_08 | dssp | 1hy9:A | 56.1 | 0 | 0 | 20 | 66 | 67 | 84 | 47.1 | 100 | 19 | 58 | 9.7 | 0.06 | 0.08 | 0.05 | 1.0 | 0.27 | 0.24 | 100.0 | 31.0 | 17.0 |
sec | 2001_08 | dssp | 1i19:A | 74.2 | 79 | 67 | 59 | 68 | 79 | 80 | 80.1 | 83 | 70 | 82 | 5.1 | 0.30 | 0.30 | 0.30 | 0.64 | 0.52 | 0.58 | 100.0 | 3.0 | 3.0 |
sec | 2001_08 | dssp | 1i42:A | 77.5 | 92 | 61 | 56 | 73 | 84 | 85 | 74.1 | 94 | 68 | 72 | 5.6 | 0.38 | 0.39 | 0.37 | 0.70 | 0.52 | 0.65 | 100.0 | 7.0 | 6.0 |
sec | 2001_08 | dssp | 1i5k:C | 92.3 | 90 | 100 | 0 | 0 | 100 | 71 | 70.2 | 66 | 100 | 100 | 0.0 | 0.61 | 0.67 | 0.56 | 0.80 | 1.0 | 0.80 | 100.0 | 7.0 | 0.00 |
sec | 2001_08 | dssp | 1i7c:A | 78.2 | 76 | 88 | 69 | 87 | 87 | 68 | 74.7 | 82 | 73 | 72 | 0.7 | 0.43 | 0.43 | 0.45 | 0.78 | 0.66 | 0.59 | 100.0 | 2.0 | 8.0 |
sec | 2001_08 | dssp | 1i7m:A | 72.6 | 66 | 85 | 64 | 78 | 83 | 63 | 65.0 | 68 | 69 | 58 | 3.0 | 0.34 | 0.34 | 0.35 | 0.68 | 0.58 | 0.52 | 100.0 | 6.0 | 6.0 |
sec | 2001_08 | dssp | 1i8n:A | 61.8 | 43 | 100 | 50 | 51 | 78 | 62 | 50.9 | 62 | 49 | 47 | 6.7 | 0.21 | 0.20 | 0.23 | 0.62 | 0.23 | 0.38 | 100.0 | 10.0 | 1.0 |
sec | 2001_08 | dssp | 1ic3:A | 69.0 | 88 | 62 | 71 | 67 | 57 | 76 | 69.0 | 93 | 80 | 53 | 0.3 | 0.32 | 0.34 | 0.32 | 0.62 | 0.60 | 0.40 | 0.0 | 11.0 | 1.0 |
sec | 2001_08 | dssp | 1ihr:A | 78.1 | 100 | 85 | 72 | 87 | 75 | 64 | 78.0 | 100 | 71 | 81 | 0.0 | 0.50 | 0.51 | 0.49 | 0.91 | 0.62 | 0.52 | 100.0 | 2.0 | 8.0 |
sec | 2001_08 | dssp | 1ip9:A | 67.1 | 95 | 60 | 47 | 55 | 62 | 79 | 63.9 | 96 | 55 | 54 | 5.8 | 0.27 | 0.28 | 0.27 | 0.66 | 0.37 | 0.47 | 0.0 | 14.0 | 3.0 |
sec | 2001_08 | dssp | 1ipg:A | 68.2 | 95 | 60 | 50 | 61 | 64 | 79 | 62.3 | 96 | 49 | 55 | 5.8 | 0.28 | 0.29 | 0.28 | 0.66 | 0.41 | 0.48 | 0.0 | 14.0 | 4.0 |
sec | 2001_08 | dssp | 1j7l:A | 83.3 | 89 | 89 | 64 | 89 | 86 | 76 | 83.4 | 90 | 71 | 82 | 0.0 | 0.52 | 0.52 | 0.54 | 0.82 | 0.71 | 0.66 | 100.0 | 0.00 | 5.0 |
sec | 2001_08 | dssp | 1jb0:C | 61.2 | 0 | 0 | 76 | 44 | 72 | 70 | 52.7 | 0 | 83 | 55 | 2.5 | 0.12 | 0.11 | 0.15 | 1.0 | 0.43 | 0.22 | 100.0 | 16.0 | 15.0 |
sec | 2001_08 | dssp | 1jb0:D | 68.1 | 60 | 46 | 53 | 65 | 78 | 78 | 60.0 | 49 | 56 | 65 | 8.6 | 0.19 | 0.20 | 0.20 | 0.41 | 0.45 | 0.53 | 100.0 | 5.0 | 5.0 |
sec | 2001_08 | dssp | 1jb0:F | 62.4 | 65 | 77 | 28 | 18 | 62 | 53 | 61.7 | 76 | 6 | 45 | 2.8 | 0.10 | 0.11 | 0.10 | 0.40 | 0.17 | 0.28 | 0.0 | 9.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:I | 76.3 | 100 | 75 | 0 | 0 | 33 | 80 | 47.9 | 58 | 0 | 30 | 0.0 | 0.36 | 0.26 | 0.48 | 0.53 | 1.0 | 0.40 | 100.0 | 21.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:J | 78.0 | 89 | 83 | 0 | 0 | 58 | 63 | 74.4 | 100 | 0 | 43 | 0.0 | 0.23 | 0.21 | 0.26 | 0.53 | 1.0 | 0.45 | 100.0 | 4.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:K | 75.0 | 93 | 68 | 0 | 0 | 56 | 90 | 86.7 | 92 | 100 | 81 | 0.0 | 0.24 | 0.23 | 0.26 | 0.53 | 1.0 | 0.53 | 100.0 | 18.0 | 0.00 |
sec | 2001_08 | dssp | 1jb0:L | 70.2 | 73 | 88 | 0 | 0 | 71 | 61 | 66.6 | 71 | 0 | 64 | 9.2 | 0.24 | 0.28 | 0.22 | 0.49 | -0.07 | 0.51 | 0.0 | 11.0 | 6.0 |
sec | 2001_08 | dssp | 1jb0:M | 100.0 | 100 | 100 | 0 | 0 | 100 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 100.0 | 0.00 | 0.00 |
sec | 2001_08 | dssp | 1jb0:X | 82.8 | 100 | 80 | 0 | 0 | 37 | 100 | 86.2 | 100 | 100 | 50 | 0.0 | 0.35 | 0.25 | 0.45 | 0.55 | 1.0 | 0.55 | 100.0 | 17.0 | 0.00 |
sec | 2001_08 | dssp | 1jb3:A | 59.1 | 54 | 44 | 64 | 73 | 56 | 57 | 55.3 | 46 | 69 | 48 | 8.6 | 0.16 | 0.16 | 0.16 | 0.30 | 0.52 | 0.31 | 100.0 | 5.0 | 4.0 |
sec | 2001_08 | dssp | 1jc7:A | 62.0 | 63 | 50 | 60 | 73 | 62 | 61 | 56.6 | 50 | 66 | 51 | 9.3 | 0.17 | 0.18 | 0.18 | 0.40 | 0.48 | 0.38 | 100.0 | 6.0 | 6.0 |
sec | 2001_08 | dssp | 1jeq:A | 74.0 | 83 | 73 | 66 | 94 | 68 | 67 | 74.2 | 80 | 81 | 64 | 0.0 | 0.40 | 0.40 | 0.42 | 0.63 | 0.74 | 0.45 | 0.0 | 5.0 | 6.0 |
sec | 2001_08 | dssp | 1jeq:B | 87.6 | 91 | 90 | 77 | 93 | 89 | 83 | 89.5 | 93 | 85 | 88 | 0.0 | 0.61 | 0.60 | 0.62 | 0.85 | 0.81 | 0.75 | 100.0 | 0.00 | 3.0 |
sec | 2001_08 | dssp | 1jey:B | 84.8 | 92 | 85 | 75 | 90 | 84 | 82 | 87.4 | 92 | 90 | 82 | 0.0 | 0.56 | 0.56 | 0.57 | 0.83 | 0.77 | 0.69 | 0.0 | 2.0 | 4.0 |
sec | 2001_08 | dssp | 1jj2:G | 93.1 | 100 | 92 | 0 | 0 | 66 | 100 | 72.6 | 74 | 100 | 66 | 0.0 | 0.60 | 0.53 | 0.67 | 0.78 | 1.0 | 0.78 | 100.0 | 6.0 | 0.00 |
sec | 2001_08 | dssp | 1jjd:A | 80.8 | 0 | 0 | 50 | 60 | 95 | 82 | 61.2 | 0 | 41 | 71 | 0.0 | 0.19 | 0.12 | 0.26 | 1.0 | 0.49 | 0.31 | 100.0 | 9.0 | 1.0 |
sec | 2001_08 | dssp | 1jjy:A | 81.0 | 82 | 91 | 64 | 70 | 84 | 72 | 80.4 | 80 | 72 | 82 | 1.4 | 0.41 | 0.41 | 0.41 | 0.73 | 0.63 | 0.64 | 100.0 | 5.0 | 0.00 |
sec | 2001_08 | dssp | 1job:A | 53.7 | 80 | 31 | 36 | 100 | 53 | 74 | 49.9 | 49 | 49 | 50 | 18.5 | 0.21 | 0.20 | 0.23 | 0.26 | 0.52 | 0.42 | 100.0 | 33.0 | 22.0 |
sec | 2001_08 | dssp | 1jod:A | 66.2 | 89 | 53 | 50 | 90 | 67 | 66 | 68.8 | 80 | 58 | 70 | 6.8 | 0.27 | 0.28 | 0.28 | 0.57 | 0.56 | 0.44 | 100.0 | 15.0 | 16.0 |
sec | 2001_08 | dssp | 1jp4:A | 87.2 | 97 | 100 | 33 | 80 | 95 | 70 | 88.9 | 100 | 47 | 89 | 0.0 | 0.72 | 0.68 | 0.76 | 0.97 | 0.46 | 0.73 | 100.0 | 1.0 | 8.0 |
sec | 2001_08 | dssp | 1jru:A | 74.2 | 73 | 52 | 60 | 78 | 81 | 81 | 68.0 | 75 | 72 | 64 | 5.6 | 0.30 | 0.31 | 0.30 | 0.52 | 0.58 | 0.59 | 100.0 | 6.0 | 6.0 |
sec | 2001_08 | dssp | THIS_month:psum | 75.0 | 76 | 69 | 47 | 59 | 73 | 75 | 70.8 | 75.2 | 64.5 | 67.2 | 2.9 | 0.36 | 0.35 | 0.38 | 0.69 | 0.62 | 0.53 | 78.2 | 8.0 | 5 |
sec | 2001_08 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2001_08 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |