METHOD about: | ../../../doc/explain_methods.html#PX_about_profsec |
METHOD url: | PROFsec |
TYPE : | sec |
NPROT : | 1554 |
NWEEKS : | 107 |
NOTE 1 : | here ALL results obtained for PROFsec in month 2000_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_05 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
sec | 2000_05 | dssp | THIS_month:psum | 74.8 | 80 | 72 | 39 | 44 | 73 | 77 | 73.8 | 79 | 63.7 | 70.5 | 4.5 | 0.35 | 0.34 | 0.35 | 0.58 | 0.71 | 0.59 | 64.2 | 8.4 | 4.4 |
sec | 2000_05 | dssp | 1d9e:A | 83.1 | 89 | 86 | 75 | 84 | 81 | 78 | 84.4 | 93 | 74 | 80 | 1.5 | 0.49 | 0.49 | 0.50 | 0.79 | 0.74 | 0.67 | 0.0 | 1.0 | 2.0 |
sec | 2000_05 | dssp | 1dj0:A | 84.1 | 87 | 78 | 82 | 90 | 83 | 83 | 85.1 | 88 | 91 | 80 | 0.0 | 0.54 | 0.54 | 0.54 | 0.77 | 0.81 | 0.68 | 100.0 | 2.0 | 2.0 |
sec | 2000_05 | dssp | 1dlj:A | 84.8 | 88 | 91 | 77 | 76 | 83 | 81 | 89.2 | 91 | 77 | 91 | 0.0 | 0.53 | 0.53 | 0.53 | 0.81 | 0.73 | 0.69 | 100.0 | 1.0 | 0.00 |
sec | 2000_05 | dssp | 1dny:A | 84.2 | 92 | 81 | 0 | 0 | 73 | 89 | 76.5 | 100 | 100 | 57 | 0.0 | 0.38 | 0.37 | 0.39 | 0.68 | 1.0 | 0.68 | 100.0 | 7.0 | 0.00 |
sec | 2000_05 | dssp | 1du2:A | 55.3 | 85 | 46 | 0 | 0 | 38 | 82 | 54.4 | 67 | 100 | 45 | 0.0 | 0.08 | 0.09 | 0.07 | 0.30 | 1.0 | 0.24 | 0.0 | 30.0 | 3.0 |
sec | 2000_05 | dssp | 1e0b:A | 59.0 | 56 | 42 | 47 | 55 | 70 | 77 | 71.6 | 56 | 55 | 95 | 21.3 | 0.18 | 0.19 | 0.19 | 0.27 | 0.28 | 0.58 | 0.0 | 8.0 | 4.0 |
sec | 2000_05 | dssp | 1edu:A | 84.6 | 90 | 90 | 0 | 0 | 72 | 72 | 82.6 | 92 | 0 | 63 | 0.6 | 0.34 | 0.34 | 0.34 | 0.66 | -0.01 | 0.62 | 100.0 | 0.00 | 0.00 |
sec | 2000_05 | dssp | 1ef1:A | 85.7 | 92 | 84 | 77 | 87 | 84 | 85 | 89.3 | 92 | 85 | 88 | 3.4 | 0.54 | 0.54 | 0.54 | 0.81 | 0.76 | 0.76 | 100.0 | 3.0 | 3.0 |
sec | 2000_05 | dssp | 1ef1:C | 77.8 | 90 | 76 | 0 | 0 | 63 | 80 | 64.0 | 94 | 0 | 42 | 0.0 | 0.25 | 0.24 | 0.28 | 0.57 | 1.0 | 0.54 | 100.0 | 9.0 | 1.0 |
sec | 2000_05 | dssp | 1ej3:A | 86.1 | 87 | 96 | 0 | 0 | 93 | 73 | 80.8 | 83 | 0 | 85 | 0.0 | 0.51 | 0.47 | 0.55 | 0.80 | 1.0 | 0.72 | 100.0 | 5.0 | 4.0 |
sec | 2000_05 | dssp | 1em2:A | 81.3 | 95 | 79 | 69 | 88 | 83 | 77 | 83.9 | 95 | 78 | 80 | 4.6 | 0.48 | 0.49 | 0.49 | 0.81 | 0.67 | 0.69 | 0.0 | 5.0 | 8.0 |
sec | 2000_05 | dssp | 1eo0:A | 59.7 | 54 | 85 | 0 | 0 | 70 | 60 | 66.6 | 60 | 100 | 80 | 16.8 | 0.14 | 0.19 | 0.11 | 0.31 | 1.0 | 0.48 | 0.0 | 24.0 | 19.0 |
sec | 2000_05 | dssp | 1eq6:A | 56.1 | 34 | 42 | 49 | 76 | 80 | 51 | 52.1 | 38 | 60 | 53 | 11.1 | 0.12 | 0.12 | 0.13 | 0.18 | 0.44 | 0.38 | 100.0 | 5.0 | 13.0 |
sec | 2000_05 | dssp | 1ewi:A | 66.7 | 84 | 32 | 75 | 65 | 60 | 91 | 53.7 | 57 | 73 | 48 | 4.3 | 0.26 | 0.29 | 0.24 | 0.42 | 0.59 | 0.49 | 100.0 | 18.0 | 3.0 |
sec | 2000_05 | dssp | THIS_month:psum | 74.8 | 80 | 72 | 39 | 44 | 73 | 77 | 73.8 | 79 | 63.7 | 70.5 | 4.5 | 0.35 | 0.34 | 0.35 | 0.58 | 0.71 | 0.59 | 64.2 | 8.4 | 4.4 |
sec | 2000_05 | dssp | ALL_proteins:psum | 76.7 | 79 | 83 | 70 | 72 | 77 | 73 | 73.0 | 71.2 | 72.5 | 68.8 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.56 | 8005.1 | 6.0 | 4.8 |
sec | 2000_05 | dssp | ALL_proteins:sig | 9.3 | 32 | 32 | 33 | 35 | 12 | 11 | 13.6 | 28.0 | 25.6 | 14.7 | 3.7 | 0.14 | 0.15 | 0.14 | 0.21 | 0.23 | 0.15 | 7927.7 | 7.2 | 5.9 |
sec | 2000_05 | dssp | ALL_proteins:errsig | 0.23 | 0.82 | 0.83 | 0.85 | 0.89 | 0.32 | 0.28 | 0.34 | 0.71 | 0.65 | 0.37 | 0.09 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 201.1 | 0.18 | 0.15 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |