| METHOD about: | ../../doc/explain_methods.html#PX_about_prof_king |
| METHOD url: | PROF_king |
| METHOD quote: | M Ouali, R King:: Cascaded multiple classifiers for secondary structure prediction. Protein Science, 9, 1162-1176, 1999. |
| TYPE : | sec |
| NPROT : | 1276 |
| NWEEKS : | 97 |
| AVE_Q3 : | 74.6 |
| AVE_SOV: | 70.5 |
| NOTE 1 : | here ALL results obtained for prof_king are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2002_10_07 | dssp | psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
| sec | 2002_10_07 | dssp | sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
| sec | 2002_10_07 | dssp | errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | prof_king | ALL | 1276 | 74.6 | |
| sec | prof_king | 2000_06 | 6 | 70.7 | old/2000_06_prof_king.html |
| sec | prof_king | 2000_07 | 17 | 75.7 | old/2000_07_prof_king.html |
| sec | prof_king | 2000_08 | 24 | 76.7 | old/2000_08_prof_king.html |
| sec | prof_king | 2000_09 | 27 | 75.9 | old/2000_09_prof_king.html |
| sec | prof_king | 2000_10 | 32 | 72.8 | old/2000_10_prof_king.html |
| sec | prof_king | 2000_11 | 40 | 75.2 | old/2000_11_prof_king.html |
| sec | prof_king | 2000_12 | 35 | 73.9 | old/2000_12_prof_king.html |
| sec | prof_king | 2001_01 | 21 | 75.0 | old/2001_01_prof_king.html |
| sec | prof_king | 2001_02 | 18 | 71.9 | old/2001_02_prof_king.html |
| sec | prof_king | 2001_03 | 28 | 72.6 | old/2001_03_prof_king.html |
| sec | prof_king | 2001_04 | 10 | 72.9 | old/2001_04_prof_king.html |
| sec | prof_king | 2001_05 | 12 | 73.5 | old/2001_05_prof_king.html |
| sec | prof_king | 2001_06 | 10 | 70.3 | old/2001_06_prof_king.html |
| sec | prof_king | 2001_07 | 22 | 76.8 | old/2001_07_prof_king.html |
| sec | prof_king | 2001_08 | 39 | 74.3 | old/2001_08_prof_king.html |
| sec | prof_king | 2001_09 | 37 | 75.4 | old/2001_09_prof_king.html |
| sec | prof_king | 2001_10 | 5 | 58.6 | old/2001_10_prof_king.html |
| sec | prof_king | 2001_11 | 8 | 67.6 | old/2001_11_prof_king.html |
| sec | prof_king | 2001_12 | 131 | 76.6 | old/2001_12_prof_king.html |
| sec | prof_king | 2002_01 | 37 | 76.1 | old/2002_01_prof_king.html |
| sec | prof_king | 2002_02 | 18 | 71.6 | old/2002_02_prof_king.html |
| sec | prof_king | 2002_03 | 4 | 72.0 | old/2002_03_prof_king.html |
| sec | prof_king | 2002_04 | 22 | 75.5 | old/2002_04_prof_king.html |
| sec | prof_king | 2002_05 | 36 | 71.6 | old/2002_05_prof_king.html |
| sec | prof_king | 2002_06 | 19 | 68.8 | old/2002_06_prof_king.html |
| sec | prof_king | 2002_07 | 25 | 77.6 | old/2002_07_prof_king.html |
| sec | prof_king | 2002_08 | 16 | 73.6 | old/2002_08_prof_king.html |
| sec | prof_king | 2002_09 | 20 | 75.1 | old/2002_09_prof_king.html |
| sec | prof_king | ALL | 1276 | 74.6 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |