METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2001_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_03 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_03 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_03 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2001_03 | dssp | THIS_month:psum | 72.5 | 67 | 80 | 52 | 43 | 73 | 68 | 66.5 | 68.9 | 69.8 | 62.7 | 2.8 | 0.30 | 0.30 | 0.30 | 0.60 | 0.63 | 0.47 | 85.1 | 9.2 | 4.4 |
sec | 2001_03 | dssp | 1ejj:A | 77.0 | 67 | 94 | 80 | 58 | 83 | 76 | 78.6 | 76 | 85 | 77 | 3.9 | 0.39 | 0.39 | 0.39 | 0.71 | 0.60 | 0.61 | 100.0 | 10.0 | 6.0 |
sec | 2001_03 | dssp | 1ekp:A | 83.0 | 77 | 94 | 82 | 78 | 85 | 81 | 73.7 | 85 | 84 | 64 | 1.3 | 0.49 | 0.49 | 0.50 | 0.81 | 0.71 | 0.68 | 100.0 | 4.0 | 1.0 |
sec | 2001_03 | dssp | 1eu8:A | 81.6 | 83 | 96 | 58 | 87 | 91 | 67 | 79.9 | 90 | 69 | 71 | 0.0 | 0.51 | 0.50 | 0.53 | 0.81 | 0.66 | 0.64 | 100.0 | 6.0 | 6.0 |
sec | 2001_03 | dssp | 1fi4:A | 72.4 | 63 | 93 | 82 | 61 | 76 | 66 | 73.5 | 68 | 87 | 71 | 3.0 | 0.34 | 0.35 | 0.35 | 0.66 | 0.62 | 0.50 | 100.0 | 13.0 | 6.0 |
sec | 2001_03 | dssp | 1fn9:A | 59.2 | 42 | 90 | 52 | 31 | 77 | 57 | 56.2 | 56 | 50 | 57 | 5.2 | 0.16 | 0.16 | 0.16 | 0.48 | 0.30 | 0.31 | 100.0 | 23.0 | 7.0 |
sec | 2001_03 | dssp | 1fp1:D | 73.6 | 80 | 81 | 40 | 60 | 71 | 64 | 72.6 | 78 | 53 | 69 | 2.5 | 0.26 | 0.25 | 0.27 | 0.58 | 0.44 | 0.49 | 100.0 | 0.00 | 3.0 |
sec | 2001_03 | dssp | 1fpx:A | 78.3 | 81 | 86 | 63 | 90 | 81 | 63 | 75.1 | 75 | 81 | 71 | 1.7 | 0.39 | 0.39 | 0.40 | 0.67 | 0.72 | 0.57 | 100.0 | 3.0 | 4.0 |
sec | 2001_03 | dssp | 1fse:A | 94.0 | 97 | 93 | 0 | 0 | 87 | 95 | 100.0 | 100 | 100 | 100 | 0.0 | 0.66 | 0.65 | 0.67 | 0.86 | 1.0 | 0.86 | 100.0 | 2.0 | 0.00 |
sec | 2001_03 | dssp | 1g12:A | 55.1 | 37 | 97 | 69 | 20 | 79 | 55 | 61.1 | 55 | 51 | 71 | 14.9 | 0.17 | 0.19 | 0.16 | 0.43 | 0.27 | 0.42 | 100.0 | 34.0 | 19.0 |
sec | 2001_03 | dssp | 1g2h:A | 75.4 | 96 | 71 | 0 | 0 | 57 | 95 | 53.9 | 97 | 100 | 36 | 0.0 | 0.33 | 0.36 | 0.31 | 0.64 | 1.0 | 0.57 | 0.0 | 16.0 | 4.0 |
sec | 2001_03 | dssp | 1g5b:A | 67.1 | 60 | 73 | 54 | 52 | 77 | 69 | 61.8 | 62 | 54 | 64 | 6.8 | 0.19 | 0.20 | 0.20 | 0.52 | 0.41 | 0.48 | 100.0 | 5.0 | 0.00 |
sec | 2001_03 | dssp | 1g5h:A | 68.4 | 64 | 92 | 25 | 30 | 84 | 57 | 60.0 | 67 | 27 | 55 | 2.2 | 0.24 | 0.24 | 0.24 | 0.60 | 0.20 | 0.45 | 100.0 | 15.0 | 1.0 |
sec | 2001_03 | dssp | 1g8e:A | 84.7 | 86 | 95 | 100 | 33 | 77 | 77 | 80.7 | 79 | 66 | 87 | 3.0 | 0.44 | 0.48 | 0.40 | 0.73 | 0.55 | 0.69 | 0.0 | 6.0 | 6.0 |
sec | 2001_03 | dssp | 1g9l:A | 79.2 | 91 | 56 | 0 | 0 | 74 | 96 | 68.8 | 90 | 100 | 64 | 0.0 | 0.30 | 0.34 | 0.27 | 0.59 | 1.0 | 0.58 | 100.0 | 15.0 | 0.00 |
sec | 2001_03 | dssp | 1gef:A | 70.8 | 48 | 100 | 89 | 68 | 76 | 60 | 79.9 | 69 | 95 | 74 | 5.8 | 0.36 | 0.36 | 0.38 | 0.61 | 0.66 | 0.50 | 0.0 | 18.0 | 9.0 |
sec | 2001_03 | dssp | 1ggq:A | 81.5 | 89 | 88 | 0 | 0 | 74 | 63 | 72.7 | 79 | 0 | 63 | 1.8 | 0.28 | 0.26 | 0.32 | 0.62 | 1.0 | 0.57 | 100.0 | 0.00 | 4.0 |
sec | 2001_03 | dssp | 1hg3:A | 76.8 | 72 | 93 | 89 | 63 | 75 | 71 | 76.3 | 85 | 84 | 65 | 1.3 | 0.42 | 0.43 | 0.42 | 0.72 | 0.69 | 0.54 | 0.0 | 9.0 | 7.0 |
sec | 2001_03 | dssp | 1hhn:A | 84.2 | 0 | 0 | 0 | 0 | 100 | 84 | 14.8 | 0 | 0 | 17 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 3.0 | 11.0 |
sec | 2001_03 | dssp | 1hn5:A | 64.9 | 73 | 79 | 50 | 52 | 59 | 53 | 65.3 | 80 | 44 | 54 | 2.2 | 0.22 | 0.23 | 0.23 | 0.55 | 0.42 | 0.30 | 100.0 | 3.0 | 0.00 |
sec | 2001_03 | dssp | 1hn5:B | 58.6 | 67 | 65 | 51 | 43 | 51 | 56 | 58.5 | 60 | 64 | 54 | 0.9 | 0.16 | 0.17 | 0.16 | 0.41 | 0.39 | 0.17 | 100.0 | 1.0 | 2.0 |
sec | 2001_03 | dssp | 1hn5:C | 75.0 | 69 | 93 | 87 | 52 | 80 | 66 | 73.3 | 69 | 94 | 74 | 3.2 | 0.35 | 0.37 | 0.33 | 0.64 | 0.63 | 0.55 | 100.0 | 13.0 | 6.0 |
sec | 2001_03 | dssp | 1hn5:D | 62.0 | 69 | 64 | 76 | 79 | 48 | 52 | 60.2 | 63 | 86 | 48 | 1.2 | 0.23 | 0.24 | 0.24 | 0.32 | 0.75 | 0.21 | 100.0 | 3.0 | 0.00 |
sec | 2001_03 | dssp | 1hn5:E | 54.8 | 58 | 53 | 72 | 47 | 47 | 60 | 44.1 | 41 | 88 | 39 | 3.5 | 0.12 | 0.13 | 0.12 | 0.24 | 0.52 | 0.16 | 100.0 | 4.0 | 5.0 |
sec | 2001_03 | dssp | 1hn5:F | 59.9 | 56 | 62 | 68 | 78 | 60 | 52 | 57.3 | 48 | 81 | 62 | 2.2 | 0.19 | 0.20 | 0.20 | 0.28 | 0.69 | 0.23 | 100.0 | 4.0 | 1.0 |
sec | 2001_03 | dssp | 1hux:A | 76.1 | 68 | 93 | 86 | 65 | 78 | 70 | 81.2 | 79 | 94 | 75 | 5.4 | 0.39 | 0.40 | 0.39 | 0.69 | 0.66 | 0.60 | 100.0 | 11.0 | 7.0 |
sec | 2001_03 | dssp | 1hx1:B | 89.3 | 95 | 91 | 0 | 0 | 66 | 80 | 75.8 | 78 | 100 | 65 | 0.0 | 0.38 | 0.36 | 0.40 | 0.66 | 1.0 | 0.66 | 100.0 | 3.0 | 0.00 |
sec | 2001_03 | dssp | 1i17:A | 56.1 | 39 | 80 | 33 | 16 | 77 | 53 | 40.2 | 32 | 50 | 48 | 3.7 | 0.09 | 0.09 | 0.09 | 0.35 | 0.17 | 0.23 | 100.0 | 25.0 | 5.0 |
sec | 2001_03 | dssp | THIS_month:psum | 72.5 | 67 | 80 | 52 | 43 | 73 | 68 | 66.5 | 68.9 | 69.8 | 62.7 | 2.8 | 0.30 | 0.30 | 0.30 | 0.60 | 0.63 | 0.47 | 85.1 | 9.2 | 4.4 |
sec | 2001_03 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_03 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_03 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |