METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_01 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_01 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_01 | dssp | THIS_month:psum | 76.1 | 58 | 76 | 47 | 49 | 82 | 67 | 68.3 | 67.8 | 73.8 | 72.3 | 1.6 | 0.34 | 0.34 | 0.34 | 0.70 | 0.65 | 0.54 | 86.1 | 9.8 | 3.9 |
sec | 2002_01 | dssp | 1ear:A | 81.7 | 67 | 100 | 89 | 83 | 82 | 74 | 84.2 | 83 | 91 | 76 | 0.0 | 0.53 | 0.52 | 0.55 | 0.78 | 0.76 | 0.62 | 100.0 | 7.0 | 2.0 |
sec | 2002_01 | dssp | 1ez4:A | 68.5 | 47 | 100 | 81 | 65 | 91 | 56 | 71.2 | 58 | 87 | 78 | 6.8 | 0.35 | 0.35 | 0.35 | 0.56 | 0.63 | 0.55 | 0.0 | 24.0 | 5.0 |
sec | 2002_01 | dssp | 1ez4:B | 60.3 | 35 | 100 | 81 | 59 | 82 | 48 | 55.6 | 38 | 87 | 59 | 6.8 | 0.27 | 0.26 | 0.28 | 0.47 | 0.59 | 0.39 | 0.0 | 30.0 | 8.0 |
sec | 2002_01 | dssp | 1hj0:A | 61.0 | 50 | 100 | 0 | 0 | 100 | 36 | 43.5 | 40 | 100 | 64 | 0.0 | 0.21 | 0.24 | 0.19 | 0.42 | 1.0 | 0.42 | 100.0 | 39.0 | 0.00 |
sec | 2002_01 | dssp | 1hty:A | 75.7 | 73 | 85 | 69 | 68 | 80 | 75 | 70.2 | 76 | 73 | 65 | 3.4 | 0.35 | 0.35 | 0.36 | 0.73 | 0.56 | 0.58 | 100.0 | 3.0 | 0.00 |
sec | 2002_01 | dssp | 1hzm:A | 68.8 | 65 | 67 | 72 | 29 | 69 | 82 | 67.6 | 73 | 48 | 67 | 1.9 | 0.22 | 0.25 | 0.21 | 0.53 | 0.40 | 0.40 | 100.0 | 0.00 | 10.0 |
sec | 2002_01 | dssp | 1ijh:A | 67.5 | 41 | 95 | 65 | 68 | 84 | 61 | 56.1 | 50 | 62 | 56 | 0.4 | 0.29 | 0.27 | 0.33 | 0.55 | 0.57 | 0.39 | 100.0 | 16.0 | 1.0 |
sec | 2002_01 | dssp | 1ijl:A | 71.5 | 53 | 100 | 66 | 46 | 91 | 64 | 55.1 | 46 | 55 | 68 | 1.6 | 0.34 | 0.33 | 0.35 | 0.61 | 0.51 | 0.51 | 100.0 | 21.0 | 3.0 |
sec | 2002_01 | dssp | 1jad:A | 88.8 | 91 | 95 | 0 | 0 | 74 | 65 | 35.9 | 33 | 100 | 64 | 1.6 | 0.33 | 0.37 | 0.29 | 0.59 | 1.0 | 0.63 | 100.0 | 3.0 | 1.0 |
sec | 2002_01 | dssp | 1jgk:A | 87.9 | 0 | 0 | 96 | 77 | 82 | 97 | 92.8 | 100 | 89 | 95 | 0.0 | 0.50 | 0.52 | 0.50 | 1.0 | 0.76 | 0.76 | 0.0 | 0.00 | 9.0 |
sec | 2002_01 | dssp | 1jgs:A | 83.3 | 94 | 86 | 72 | 80 | 63 | 76 | 76.5 | 79 | 81 | 67 | 0.0 | 0.45 | 0.44 | 0.47 | 0.71 | 0.74 | 0.58 | 100.0 | 5.0 | 0.00 |
sec | 2002_01 | dssp | 1jh1:A | 82.3 | 60 | 100 | 88 | 55 | 89 | 89 | 78.1 | 68 | 85 | 79 | 5.0 | 0.47 | 0.47 | 0.48 | 0.73 | 0.62 | 0.73 | 100.0 | 9.0 | 9.0 |
sec | 2002_01 | dssp | 1jke:A | 75.9 | 85 | 93 | 72 | 70 | 74 | 71 | 69.2 | 88 | 66 | 60 | 4.8 | 0.44 | 0.44 | 0.45 | 0.86 | 0.50 | 0.57 | 100.0 | 2.0 | 0.00 |
sec | 2002_01 | dssp | 1joc:A | 74.0 | 78 | 87 | 8 | 100 | 85 | 60 | 41.8 | 41 | 8 | 51 | 1.6 | 0.28 | 0.25 | 0.31 | 0.62 | 0.27 | 0.53 | 0.0 | 5.0 | 8.0 |
sec | 2002_01 | dssp | 1jr8:A | 85.7 | 84 | 93 | 0 | 0 | 87 | 72 | 81.1 | 75 | 100 | 95 | 0.0 | 0.39 | 0.41 | 0.38 | 0.69 | 1.0 | 0.69 | 100.0 | 6.0 | 0.00 |
sec | 2002_01 | dssp | 1jr8:B | 85.7 | 82 | 96 | 0 | 0 | 93 | 69 | 81.6 | 76 | 100 | 95 | 0.0 | 0.43 | 0.45 | 0.41 | 0.70 | 1.0 | 0.70 | 100.0 | 10.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:A | 88.7 | 85 | 96 | 0 | 0 | 94 | 76 | 82.2 | 76 | 100 | 97 | 0.0 | 0.50 | 0.52 | 0.49 | 0.76 | 1.0 | 0.76 | 100.0 | 7.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:C | 87.6 | 87 | 93 | 0 | 0 | 88 | 77 | 83.2 | 77 | 100 | 98 | 0.0 | 0.44 | 0.46 | 0.44 | 0.73 | 1.0 | 0.73 | 100.0 | 4.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:D | 88.3 | 88 | 93 | 0 | 0 | 88 | 78 | 84.4 | 78 | 100 | 98 | 0.0 | 0.46 | 0.47 | 0.45 | 0.74 | 1.0 | 0.74 | 100.0 | 3.0 | 0.00 |
sec | 2002_01 | dssp | 1jy8:A | 70.3 | 62 | 97 | 64 | 68 | 84 | 58 | 66.1 | 73 | 64 | 59 | 4.5 | 0.33 | 0.33 | 0.34 | 0.69 | 0.52 | 0.51 | 0.0 | 12.0 | 1.0 |
sec | 2002_01 | dssp | 1k04:A | 86.6 | 88 | 94 | 0 | 0 | 80 | 65 | 79.7 | 80 | 100 | 75 | 0.0 | 0.34 | 0.36 | 0.33 | 0.64 | 1.0 | 0.64 | 100.0 | 4.0 | 0.00 |
sec | 2002_01 | dssp | 1k2f:A | 66.8 | 26 | 83 | 77 | 70 | 76 | 61 | 64.9 | 26 | 91 | 58 | 4.7 | 0.22 | 0.20 | 0.24 | 0.41 | 0.55 | 0.43 | 100.0 | 13.0 | 4.0 |
sec | 2002_01 | dssp | 1k7c:A | 76.4 | 76 | 88 | 64 | 60 | 80 | 73 | 68.6 | 78 | 68 | 62 | 2.1 | 0.36 | 0.36 | 0.36 | 0.71 | 0.54 | 0.57 | 100.0 | 5.0 | 1.0 |
sec | 2002_01 | dssp | 1k8t:A | 64.5 | 57 | 83 | 50 | 51 | 76 | 57 | 53.8 | 49 | 54 | 58 | 2.4 | 0.20 | 0.20 | 0.21 | 0.53 | 0.41 | 0.36 | 100.0 | 13.0 | 0.00 |
sec | 2002_01 | dssp | 1k9q:A | 87.5 | 0 | 0 | 69 | 90 | 96 | 86 | 93.8 | 100 | 80 | 100 | 0.0 | 0.42 | 0.40 | 0.45 | 1.0 | 0.70 | 0.70 | 100.0 | 0.00 | 7.0 |
sec | 2002_01 | dssp | 1k9r:A | 82.5 | 0 | 0 | 60 | 90 | 96 | 80 | 89.7 | 100 | 76 | 97 | 0.0 | 0.33 | 0.31 | 0.36 | 1.0 | 0.62 | 0.62 | 100.0 | 0.00 | 12.0 |
sec | 2002_01 | dssp | 1kb0:A | 71.7 | 0 | 0 | 80 | 68 | 80 | 74 | 68.1 | 0 | 82 | 72 | 3.3 | 0.22 | 0.19 | 0.26 | 1.0 | 0.57 | 0.49 | 100.0 | 10.0 | 6.0 |
sec | 2002_01 | dssp | 1kbe:A | 46.9 | 0 | 0 | 9 | 33 | 57 | 68 | 30.9 | 100 | 9 | 34 | 0.0 | 0.13 | 0.17 | 0.11 | 1.0 | 0.06 | -0.28 | 100.0 | 28.0 | 16.0 |
sec | 2002_01 | dssp | 1khv:B | 75.3 | 82 | 92 | 30 | 65 | 86 | 64 | 66.9 | 88 | 35 | 56 | 0.6 | 0.39 | 0.37 | 0.42 | 0.78 | 0.37 | 0.54 | 100.0 | 4.0 | 9.0 |
sec | 2002_01 | dssp | 1kkc:A | 78.5 | 76 | 93 | 64 | 94 | 88 | 59 | 64.7 | 56 | 84 | 82 | 0.0 | 0.43 | 0.43 | 0.44 | 0.68 | 0.75 | 0.57 | 100.0 | 10.0 | 3.0 |
sec | 2002_01 | dssp | 1kkc:B | 79.4 | 78 | 93 | 60 | 93 | 88 | 60 | 72.9 | 67 | 80 | 83 | 0.0 | 0.44 | 0.44 | 0.45 | 0.71 | 0.72 | 0.59 | 100.0 | 9.0 | 4.0 |
sec | 2002_01 | dssp | 1kkc:X | 80.0 | 80 | 92 | 60 | 93 | 86 | 62 | 73.0 | 68 | 80 | 81 | 0.0 | 0.44 | 0.44 | 0.46 | 0.71 | 0.72 | 0.59 | 100.0 | 7.0 | 4.0 |
sec | 2002_01 | dssp | 1kni:A | 70.4 | 66 | 90 | 80 | 54 | 76 | 50 | 61.8 | 58 | 74 | 69 | 4.3 | 0.26 | 0.29 | 0.25 | 0.52 | 0.61 | 0.45 | 100.0 | 17.0 | 4.0 |
sec | 2002_01 | dssp | 1knz:A | 71.3 | 68 | 93 | 0 | 0 | 80 | 40 | 66.8 | 64 | 100 | 82 | 1.8 | 0.15 | 0.18 | 0.12 | 0.40 | 1.0 | 0.42 | 100.0 | 21.0 | 1.0 |
sec | 2002_01 | dssp | 1kov:A | 69.1 | 0 | 0 | 66 | 41 | 69 | 86 | 55.0 | 100 | 48 | 56 | 0.0 | 0.08 | 0.09 | 0.08 | 1.0 | 0.32 | 0.32 | 100.0 | 0.00 | 14.0 |
sec | 2002_01 | dssp | 1kpl:B | 80.0 | 82 | 93 | 0 | 0 | 74 | 57 | 72.5 | 82 | 0 | 48 | 1.5 | 0.26 | 0.29 | 0.23 | 0.58 | -0.01 | 0.53 | 100.0 | 8.0 | 1.0 |
sec | 2002_01 | dssp | THIS_month:psum | 76.1 | 58 | 76 | 47 | 49 | 82 | 67 | 68.3 | 67.8 | 73.8 | 72.3 | 1.6 | 0.34 | 0.34 | 0.34 | 0.70 | 0.65 | 0.54 | 86.1 | 9.8 | 3.9 |
sec | 2002_01 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_01 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |