METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2001_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_05 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_05 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2001_05 | dssp | THIS_month:psum | 73.5 | 52 | 66 | 50 | 44 | 72 | 74 | 64.9 | 69.8 | 57.7 | 63.7 | 1.0 | 0.25 | 0.25 | 0.26 | 0.64 | 0.55 | 0.44 | 90.9 | 3.8 | 5.9 |
sec | 2001_05 | dssp | 1c8b:A | 67.2 | 76 | 63 | 63 | 57 | 62 | 75 | 62.8 | 69 | 66 | 57 | 3.1 | 0.23 | 0.23 | 0.23 | 0.55 | 0.50 | 0.41 | 0.0 | 6.0 | 2.0 |
sec | 2001_05 | dssp | 1ews:A | 81.2 | 0 | 0 | 69 | 81 | 89 | 80 | 78.4 | 100 | 76 | 79 | 0.0 | 0.29 | 0.28 | 0.30 | 1.0 | 0.60 | 0.60 | 100.0 | 0.00 | 6.0 |
sec | 2001_05 | dssp | 1ezv:G | 57.0 | 41 | 61 | 50 | 62 | 72 | 54 | 39.3 | 24 | 60 | 60 | 1.0 | 0.13 | 0.12 | 0.14 | 0.24 | 0.51 | 0.18 | 100.0 | 13.0 | 2.0 |
sec | 2001_05 | dssp | 1fwo:A | 68.6 | 0 | 0 | 50 | 18 | 70 | 91 | 49.7 | 100 | 21 | 52 | 0.0 | 0.02 | 0.03 | 0.01 | 1.0 | 0.14 | 0.14 | 100.0 | 0.00 | 20.0 |
sec | 2001_05 | dssp | 1g4y:B | 90.1 | 95 | 94 | 0 | 0 | 71 | 71 | 70.9 | 71 | 0 | 69 | 0.0 | 0.42 | 0.39 | 0.45 | 0.70 | 1.0 | 0.65 | 100.0 | 1.0 | 1.0 |
sec | 2001_05 | dssp | 1g5v:A | 76.8 | 33 | 100 | 81 | 78 | 76 | 74 | 75.8 | 33 | 88 | 68 | 0.0 | 0.31 | 0.29 | 0.33 | 0.56 | 0.60 | 0.53 | 100.0 | 3.0 | 1.0 |
sec | 2001_05 | dssp | 1i7w:B | 62.7 | 57 | 53 | 0 | 0 | 64 | 80 | 22.1 | 64 | 100 | 18 | 0.0 | 0.12 | 0.15 | 0.10 | 0.37 | 1.0 | 0.19 | 100.0 | 1.0 | 11.0 |
sec | 2001_05 | dssp | 1ib2:A | 82.3 | 87 | 89 | 0 | 0 | 71 | 66 | 85.8 | 92 | 0 | 71 | 0.9 | 0.26 | 0.27 | 0.27 | 0.58 | -0.00 | 0.57 | 100.0 | 1.0 | 0.00 |
sec | 2001_05 | dssp | 1ifq:A | 80.3 | 81 | 95 | 78 | 76 | 80 | 71 | 94.7 | 100 | 87 | 94 | 0.7 | 0.48 | 0.48 | 0.48 | 0.81 | 0.69 | 0.60 | 100.0 | 5.0 | 0.00 |
sec | 2001_05 | dssp | 1ihn:A | 65.5 | 53 | 93 | 77 | 54 | 64 | 68 | 63.1 | 65 | 59 | 64 | 5.3 | 0.25 | 0.24 | 0.26 | 0.64 | 0.44 | 0.40 | 100.0 | 10.0 | 13.0 |
sec | 2001_05 | dssp | 1ija:A | 77.0 | 50 | 80 | 84 | 67 | 74 | 85 | 71.5 | 50 | 78 | 69 | 0.6 | 0.30 | 0.30 | 0.31 | 0.61 | 0.59 | 0.55 | 100.0 | 2.0 | 9.0 |
sec | 2001_05 | dssp | THIS_month:psum | 73.5 | 52 | 66 | 50 | 44 | 72 | 74 | 64.9 | 69.8 | 57.7 | 63.7 | 1.0 | 0.25 | 0.25 | 0.26 | 0.64 | 0.55 | 0.44 | 90.9 | 3.8 | 5.9 |
sec | 2001_05 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_05 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |