METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_07 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_07 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_07 | dssp | THIS_month:psum | 77.6 | 59 | 70 | 59 | 61 | 80 | 72 | 77.3 | 75.0 | 81.9 | 73.8 | 1.8 | 0.37 | 0.37 | 0.36 | 0.71 | 0.68 | 0.57 | 83.3 | 6.7 | 4.5 |
sec | 2002_07 | dssp | 1ifr:A | 83.2 | 0 | 0 | 81 | 83 | 84 | 83 | 83.8 | 100 | 84 | 82 | 0.0 | 0.34 | 0.34 | 0.35 | 1.0 | 0.66 | 0.66 | 100.0 | 0.00 | 0.00 |
sec | 2002_07 | dssp | 1ify:A | 89.8 | 93 | 93 | 0 | 0 | 84 | 88 | 92.3 | 100 | 100 | 82 | 0.0 | 0.55 | 0.58 | 0.52 | 0.82 | 1.0 | 0.78 | 100.0 | 0.00 | 2.0 |
sec | 2002_07 | dssp | 1ipa:A | 72.1 | 61 | 100 | 85 | 66 | 80 | 55 | 74.8 | 67 | 95 | 72 | 2.9 | 0.40 | 0.42 | 0.40 | 0.66 | 0.68 | 0.48 | 100.0 | 19.0 | 5.0 |
sec | 2002_07 | dssp | 1iqo:A | 60.2 | 72 | 41 | 64 | 60 | 53 | 82 | 51.2 | 48 | 59 | 50 | 5.6 | 0.22 | 0.23 | 0.21 | 0.33 | 0.54 | 0.37 | 100.0 | 19.0 | 1.0 |
sec | 2002_07 | dssp | 1iu1:B | 78.0 | 0 | 0 | 77 | 87 | 87 | 70 | 84.1 | 0 | 98 | 76 | 0.0 | 0.32 | 0.29 | 0.36 | 1.0 | 0.66 | 0.57 | 0.0 | 4.0 | 5.0 |
sec | 2002_07 | dssp | 1j58:A | 71.5 | 55 | 50 | 64 | 87 | 83 | 69 | 67.9 | 58 | 67 | 72 | 4.3 | 0.27 | 0.27 | 0.27 | 0.43 | 0.63 | 0.52 | 100.0 | 1.0 | 10.0 |
sec | 2002_07 | dssp | 1j5p:A | 72.5 | 54 | 88 | 85 | 70 | 78 | 66 | 76.7 | 60 | 92 | 79 | 4.2 | 0.34 | 0.33 | 0.35 | 0.59 | 0.67 | 0.52 | 0.0 | 12.0 | 5.0 |
sec | 2002_07 | dssp | 1j5s:A | 79.6 | 81 | 91 | 45 | 58 | 84 | 70 | 80.0 | 89 | 55 | 72 | 0.8 | 0.37 | 0.38 | 0.38 | 0.72 | 0.48 | 0.60 | 100.0 | 5.0 | 1.0 |
sec | 2002_07 | dssp | 1j5w:B | 67.3 | 57 | 84 | 54 | 66 | 82 | 59 | 70.1 | 65 | 70 | 74 | 2.9 | 0.25 | 0.25 | 0.27 | 0.57 | 0.50 | 0.44 | 0.0 | 11.0 | 3.0 |
sec | 2002_07 | dssp | 1jmm:A | 64.5 | 33 | 59 | 72 | 58 | 70 | 70 | 54.4 | 25 | 73 | 58 | 6.1 | 0.15 | 0.15 | 0.16 | 0.36 | 0.45 | 0.41 | 100.0 | 7.0 | 7.0 |
sec | 2002_07 | dssp | 1k0h:A | 71.8 | 0 | 0 | 96 | 54 | 64 | 98 | 46.3 | 100 | 92 | 40 | 0.0 | 0.31 | 0.41 | 0.23 | 1.0 | 0.62 | 0.50 | 100.0 | 9.0 | 17.0 |
sec | 2002_07 | dssp | 1kam:C | 88.1 | 92 | 100 | 76 | 90 | 93 | 78 | 100.0 | 100 | 100 | 100 | 0.0 | 0.67 | 0.67 | 0.68 | 0.94 | 0.77 | 0.76 | 100.0 | 2.0 | 4.0 |
sec | 2002_07 | dssp | 1kc0:A | 80.2 | 79 | 96 | 64 | 70 | 87 | 71 | 72.2 | 88 | 66 | 58 | 1.6 | 0.45 | 0.45 | 0.46 | 0.79 | 0.60 | 0.64 | 100.0 | 7.0 | 1.0 |
sec | 2002_07 | dssp | 1key:B | 82.4 | 85 | 93 | 0 | 0 | 71 | 61 | 71.8 | 76 | 100 | 57 | 0.0 | 0.31 | 0.36 | 0.28 | 0.62 | 1.0 | 0.54 | 100.0 | 6.0 | 2.0 |
sec | 2002_07 | dssp | 1kkx:A | 81.4 | 96 | 75 | 0 | 0 | 65 | 94 | 75.7 | 91 | 100 | 62 | 0.0 | 0.36 | 0.35 | 0.38 | 0.65 | 1.0 | 0.65 | 100.0 | 14.0 | 0.00 |
sec | 2002_07 | dssp | 1kn6:A | 76.7 | 58 | 66 | 57 | 72 | 90 | 80 | 78.7 | 64 | 64 | 89 | 5.4 | 0.31 | 0.30 | 0.32 | 0.52 | 0.57 | 0.63 | 100.0 | 2.0 | 4.0 |
sec | 2002_07 | dssp | 1kq1:H | 80.3 | 57 | 100 | 87 | 82 | 84 | 69 | 91.4 | 78 | 98 | 89 | 4.5 | 0.44 | 0.43 | 0.46 | 0.71 | 0.69 | 0.65 | 100.0 | 9.0 | 3.0 |
sec | 2002_07 | dssp | 1l3l:A | 83.7 | 89 | 89 | 63 | 95 | 84 | 73 | 89.6 | 94 | 80 | 86 | 0.8 | 0.49 | 0.48 | 0.51 | 0.77 | 0.75 | 0.66 | 100.0 | 0.00 | 5.0 |
sec | 2002_07 | dssp | 1lj2:B | 88.2 | 89 | 98 | 50 | 100 | 94 | 57 | 77.4 | 76 | 66 | 86 | 0.0 | 0.53 | 0.55 | 0.51 | 0.77 | 0.69 | 0.67 | 0.0 | 7.0 | 2.0 |
sec | 2002_07 | dssp | 1ljo:A | 74.7 | 60 | 85 | 78 | 86 | 73 | 56 | 86.5 | 70 | 93 | 81 | 0.0 | 0.35 | 0.35 | 0.36 | 0.68 | 0.62 | 0.46 | 100.0 | 3.0 | 5.0 |
sec | 2002_07 | dssp | 1lqr:A | 71.4 | 0 | 0 | 60 | 27 | 73 | 91 | 70.3 | 100 | 24 | 78 | 0.0 | 0.05 | 0.07 | 0.05 | 1.0 | 0.25 | 0.25 | 100.0 | 0.00 | 17.0 |
sec | 2002_07 | dssp | 1lvf:A | 87.7 | 86 | 98 | 0 | 0 | 93 | 62 | 92.8 | 95 | 100 | 77 | 2.8 | 0.43 | 0.53 | 0.34 | 0.66 | 1.0 | 0.71 | 100.0 | 10.0 | 2.0 |
sec | 2002_07 | dssp | 1ly1:A | 79.6 | 75 | 91 | 95 | 73 | 80 | 69 | 87.4 | 87 | 100 | 82 | 1.9 | 0.44 | 0.45 | 0.43 | 0.67 | 0.80 | 0.60 | 100.0 | 9.0 | 3.0 |
sec | 2002_07 | dssp | 1m4v:A | 78.0 | 64 | 100 | 78 | 88 | 85 | 62 | 81.2 | 71 | 91 | 70 | 0.0 | 0.45 | 0.44 | 0.47 | 0.77 | 0.68 | 0.56 | 100.0 | 6.0 | 6.0 |
sec | 2002_07 | dssp | THIS_month:psum | 77.6 | 59 | 70 | 59 | 61 | 80 | 72 | 77.3 | 75.0 | 81.9 | 73.8 | 1.8 | 0.37 | 0.37 | 0.36 | 0.71 | 0.68 | 0.57 | 83.3 | 6.7 | 4.5 |
sec | 2002_07 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_07 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |