METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_08 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_08 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_08 | dssp | THIS_month:psum | 73.5 | 50 | 70 | 54 | 48 | 77 | 70 | 67.8 | 64.4 | 67 | 68.8 | 4.4 | 0.29 | 0.29 | 0.30 | 0.60 | 0.53 | 0.52 | 86.6 | 7 | 6.7 |
sec | 2002_08 | dssp | 1h1j:S | 84.1 | 77 | 95 | 0 | 0 | 94 | 72 | 68.0 | 61 | 100 | 85 | 0.0 | 0.41 | 0.42 | 0.41 | 0.70 | 1.0 | 0.70 | 100.0 | 11.0 | 0.00 |
sec | 2002_08 | dssp | 1htw:A | 79.7 | 82 | 95 | 73 | 79 | 81 | 70 | 78.6 | 90 | 82 | 67 | 0.0 | 0.49 | 0.49 | 0.50 | 0.83 | 0.67 | 0.59 | 0.0 | 4.0 | 1.0 |
sec | 2002_08 | dssp | 1iw4:A | 70.9 | 0 | 0 | 40 | 33 | 92 | 87 | 64.4 | 0 | 40 | 82 | 14.5 | 0.32 | 0.30 | 0.35 | -0.09 | 0.20 | 0.65 | 100.0 | 7.0 | 3.0 |
sec | 2002_08 | dssp | 1jv1:A | 75.0 | 80 | 85 | 0 | 0 | 57 | 53 | 68.3 | 72 | 100 | 53 | 1.7 | 0.12 | 0.13 | 0.11 | 0.36 | 1.0 | 0.39 | 100.0 | 3.0 | 1.0 |
sec | 2002_08 | dssp | 1k4n:A | 69.1 | 83 | 77 | 57 | 76 | 65 | 55 | 69.5 | 86 | 58 | 66 | 3.9 | 0.30 | 0.31 | 0.31 | 0.68 | 0.52 | 0.40 | 100.0 | 2.0 | 8.0 |
sec | 2002_08 | dssp | 1koz:A | 77.8 | 0 | 0 | 66 | 40 | 80 | 92 | 65.4 | 100 | 40 | 69 | 0.0 | 0.13 | 0.15 | 0.11 | 1.0 | 0.38 | 0.38 | 100.0 | 0.00 | 11.0 |
sec | 2002_08 | dssp | 1kr4:A | 72.7 | 83 | 83 | 72 | 84 | 58 | 48 | 78.8 | 100 | 73 | 62 | 0.0 | 0.42 | 0.42 | 0.42 | 0.75 | 0.65 | 0.34 | 100.0 | 0.00 | 5.0 |
sec | 2002_08 | dssp | 1ku0:A | 66.2 | 53 | 95 | 59 | 41 | 80 | 64 | 64.8 | 61 | 57 | 70 | 5.4 | 0.24 | 0.25 | 0.25 | 0.60 | 0.37 | 0.44 | 100.0 | 17.0 | 6.0 |
sec | 2002_08 | dssp | 1l5p:A | 66.7 | 15 | 100 | 82 | 54 | 78 | 75 | 58.3 | 21 | 81 | 59 | 9.6 | 0.22 | 0.20 | 0.25 | 0.36 | 0.48 | 0.52 | 100.0 | 17.0 | 15.0 |
sec | 2002_08 | dssp | 1l7y:A | 72.3 | 47 | 100 | 78 | 57 | 78 | 78 | 62.2 | 41 | 80 | 64 | 6.3 | 0.31 | 0.30 | 0.33 | 0.64 | 0.50 | 0.57 | 100.0 | 10.0 | 10.0 |
sec | 2002_08 | dssp | 1lmz:A | 81.3 | 87 | 84 | 0 | 0 | 77 | 80 | 69.4 | 74 | 0 | 65 | 1.0 | 0.34 | 0.35 | 0.35 | 0.68 | -0.02 | 0.63 | 100.0 | 1.0 | 0.00 |
sec | 2002_08 | dssp | 1luz:A | 75.3 | 21 | 100 | 84 | 76 | 87 | 72 | 73.3 | 16 | 95 | 91 | 7.0 | 0.33 | 0.30 | 0.38 | 0.43 | 0.62 | 0.65 | 0.0 | 12.0 | 4.0 |
sec | 2002_08 | dssp | 1lw7:A | 70.1 | 60 | 91 | 88 | 50 | 75 | 66 | 69.9 | 68 | 90 | 65 | 5.8 | 0.30 | 0.32 | 0.29 | 0.59 | 0.58 | 0.50 | 100.0 | 15.0 | 11.0 |
sec | 2002_08 | dssp | 1m4i:A | 62.4 | 72 | 58 | 35 | 74 | 80 | 60 | 58.4 | 77 | 35 | 70 | 11.6 | 0.22 | 0.22 | 0.23 | 0.49 | 0.36 | 0.48 | 100.0 | 6.0 | 18.0 |
sec | 2002_08 | dssp | 1mb6:A | 80.0 | 0 | 0 | 81 | 64 | 79 | 90 | 67.8 | 100 | 74 | 64 | 0.0 | 0.26 | 0.28 | 0.26 | 1.0 | 0.57 | 0.57 | 100.0 | 0.00 | 8.0 |
sec | 2002_08 | dssp | THIS_month:psum | 73.5 | 50 | 70 | 54 | 48 | 77 | 70 | 67.8 | 64.4 | 67 | 68.8 | 4.4 | 0.29 | 0.29 | 0.30 | 0.60 | 0.53 | 0.52 | 86.6 | 7 | 6.7 |
sec | 2002_08 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_08 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |