METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2000_10 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_10 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2000_10 | dssp | THIS_month:psum | 72.8 | 59 | 72 | 54 | 51 | 75 | 69 | 70.9 | 64.8 | 73.7 | 68.4 | 3.7 | 0.31 | 0.31 | 0.31 | 0.61 | 0.66 | 0.50 | 77.4 | 8.9 | 6.0 |
sec | 2000_10 | dssp | 1c4r:A | 78.3 | 0 | 0 | 85 | 79 | 78 | 77 | 78.2 | 0 | 82 | 81 | 2.2 | 0.28 | 0.25 | 0.31 | 1.0 | 0.62 | 0.60 | 0.0 | 5.0 | 4.0 |
sec | 2000_10 | dssp | 1d6m:A | 71.2 | 68 | 94 | 73 | 64 | 73 | 54 | 61.1 | 65 | 64 | 50 | 0.0 | 0.38 | 0.39 | 0.38 | 0.66 | 0.62 | 0.41 | 100.0 | 13.0 | 2.0 |
sec | 2000_10 | dssp | 1d7b:A | 69.9 | 37 | 100 | 78 | 66 | 64 | 72 | 64.6 | 50 | 79 | 54 | 0.0 | 0.21 | 0.20 | 0.22 | 0.60 | 0.46 | 0.40 | 0.0 | 2.0 | 8.0 |
sec | 2000_10 | dssp | 1dl6:A | 75.9 | 0 | 0 | 75 | 33 | 76 | 95 | 77.2 | 100 | 42 | 82 | 0.0 | 0.13 | 0.17 | 0.11 | 1.0 | 0.38 | 0.38 | 100.0 | 0.00 | 17.0 |
sec | 2000_10 | dssp | 1e4f:T | 76.6 | 77 | 100 | 82 | 75 | 67 | 56 | 76.9 | 92 | 78 | 54 | 1.2 | 0.47 | 0.48 | 0.47 | 0.82 | 0.65 | 0.46 | 0.0 | 8.0 | 3.0 |
sec | 2000_10 | dssp | 1e68:A | 38.6 | 30 | 84 | 0 | 0 | 64 | 57 | 43.1 | 35 | 100 | 65 | 41.4 | 0.14 | 0.20 | 0.10 | 0.12 | 1.0 | 0.47 | 0.0 | 48.0 | 45.0 |
sec | 2000_10 | dssp | 1eg2:A | 75.2 | 67 | 84 | 61 | 97 | 88 | 65 | 69.0 | 64 | 74 | 69 | 0.0 | 0.41 | 0.39 | 0.44 | 0.64 | 0.73 | 0.53 | 0.0 | 6.0 | 8.0 |
sec | 2000_10 | dssp | 1ei5:A | 68.9 | 70 | 72 | 50 | 79 | 84 | 63 | 61.5 | 75 | 57 | 57 | 4.8 | 0.26 | 0.26 | 0.27 | 0.62 | 0.49 | 0.50 | 100.0 | 0.00 | 12.0 |
sec | 2000_10 | dssp | 1eje:A | 73.4 | 48 | 90 | 82 | 68 | 76 | 74 | 69.5 | 56 | 81 | 64 | 6.7 | 0.31 | 0.30 | 0.33 | 0.61 | 0.56 | 0.58 | 100.0 | 9.0 | 8.0 |
sec | 2000_10 | dssp | 1ev7:A | 55.8 | 35 | 70 | 57 | 42 | 78 | 55 | 52.0 | 47 | 49 | 58 | 12.1 | 0.11 | 0.11 | 0.11 | 0.29 | 0.35 | 0.38 | 100.0 | 21.0 | 6.0 |
sec | 2000_10 | dssp | 1ewq:A | 78.2 | 82 | 90 | 70 | 70 | 76 | 67 | 80.3 | 91 | 74 | 70 | 1.4 | 0.41 | 0.42 | 0.41 | 0.75 | 0.63 | 0.56 | 100.0 | 4.0 | 0.00 |
sec | 2000_10 | dssp | 1ezf:A | 80.4 | 84 | 90 | 0 | 0 | 69 | 63 | 74.6 | 78 | 100 | 63 | 0.6 | 0.25 | 0.28 | 0.23 | 0.57 | 1.0 | 0.52 | 100.0 | 5.0 | 2.0 |
sec | 2000_10 | dssp | 1f3u:A | 80.5 | 46 | 87 | 80 | 92 | 91 | 70 | 88.1 | 46 | 98 | 88 | 0.8 | 0.43 | 0.41 | 0.46 | 0.60 | 0.74 | 0.64 | 100.0 | 5.0 | 5.0 |
sec | 2000_10 | dssp | 1f3u:B | 62.9 | 9 | 25 | 80 | 76 | 69 | 56 | 66.9 | 2 | 100 | 62 | 1.6 | 0.24 | 0.22 | 0.26 | 0.04 | 0.63 | 0.29 | 100.0 | 11.0 | 1.0 |
sec | 2000_10 | dssp | 1f6u:A | 54.5 | 0 | 0 | 16 | 20 | 85 | 59 | 19.5 | 0 | 3 | 29 | 0.0 | 0.07 | 0.04 | 0.10 | -0.08 | 0.09 | -0.15 | 100.0 | 25.0 | 1.0 |
sec | 2000_10 | dssp | 1f81:A | 78.2 | 69 | 100 | 0 | 0 | 100 | 56 | 78.4 | 80 | 100 | 72 | 0.0 | 0.39 | 0.42 | 0.37 | 0.62 | 1.0 | 0.62 | 100.0 | 21.0 | 0.00 |
sec | 2000_10 | dssp | 1fft:C | 73.0 | 78 | 79 | 0 | 0 | 63 | 77 | 76.1 | 77 | 100 | 73 | 7.5 | 0.23 | 0.27 | 0.21 | 0.41 | 1.0 | 0.56 | 0.0 | 1.0 | 7.0 |
sec | 2000_10 | dssp | 1fho:A | 77.3 | 100 | 75 | 88 | 64 | 66 | 91 | 77.8 | 66 | 71 | 84 | 0.0 | 0.46 | 0.48 | 0.44 | 0.84 | 0.62 | 0.58 | 100.0 | 4.0 | 11.0 |
sec | 2000_10 | dssp | 1fio:A | 83.7 | 85 | 95 | 0 | 0 | 70 | 43 | 71.7 | 72 | 100 | 66 | 2.8 | 0.20 | 0.25 | 0.15 | 0.43 | 1.0 | 0.48 | 100.0 | 9.0 | 2.0 |
sec | 2000_10 | dssp | 1fiq:B | 74.1 | 77 | 72 | 68 | 64 | 74 | 81 | 79.9 | 77 | 75 | 83 | 7.8 | 0.30 | 0.31 | 0.31 | 0.61 | 0.55 | 0.62 | 100.0 | 2.0 | 1.0 |
sec | 2000_10 | dssp | 1fl4:A | 75.0 | 73 | 68 | 81 | 61 | 73 | 86 | 72.4 | 78 | 83 | 67 | 4.6 | 0.32 | 0.33 | 0.31 | 0.58 | 0.63 | 0.60 | 0.0 | 2.0 | 5.0 |
sec | 2000_10 | dssp | 1fnn:A | 85.2 | 90 | 90 | 64 | 88 | 83 | 77 | 86.0 | 92 | 73 | 80 | 0.2 | 0.50 | 0.49 | 0.52 | 0.78 | 0.73 | 0.69 | 100.0 | 0.00 | 2.0 |
sec | 2000_10 | dssp | 1fq0:A | 83.6 | 91 | 92 | 58 | 80 | 85 | 76 | 87.1 | 92 | 70 | 88 | 0.0 | 0.53 | 0.52 | 0.55 | 0.85 | 0.63 | 0.66 | 100.0 | 0.00 | 4.0 |
sec | 2000_10 | dssp | 1fqy:A | 86.7 | 89 | 89 | 0 | 0 | 82 | 86 | 93.0 | 93 | 100 | 92 | 1.7 | 0.44 | 0.47 | 0.42 | 0.71 | 1.0 | 0.75 | 100.0 | 0.00 | 1.0 |
sec | 2000_10 | dssp | 1ft9:A | 76.1 | 86 | 77 | 77 | 81 | 64 | 69 | 80.5 | 92 | 85 | 66 | 0.6 | 0.41 | 0.42 | 0.42 | 0.72 | 0.71 | 0.49 | 100.0 | 3.0 | 1.0 |
sec | 2000_10 | dssp | 1fu9:A | 58.3 | 100 | 45 | 0 | 0 | 50 | 78 | 62.3 | 100 | 0 | 56 | 2.7 | 0.23 | 0.20 | 0.27 | 0.49 | 1.0 | 0.28 | 100.0 | 33.0 | 11.0 |
sec | 2000_10 | dssp | 1fwq:A | 71.3 | 0 | 0 | 64 | 54 | 77 | 81 | 67.8 | 0 | 58 | 75 | 2.6 | 0.15 | 0.14 | 0.16 | 1.0 | 0.37 | 0.43 | 100.0 | 2.0 | 6.0 |
sec | 2000_10 | dssp | 1fxj:A | 77.4 | 67 | 92 | 91 | 71 | 73 | 75 | 76.6 | 78 | 75 | 76 | 1.8 | 0.43 | 0.43 | 0.44 | 0.72 | 0.71 | 0.56 | 100.0 | 7.0 | 8.0 |
sec | 2000_10 | dssp | 1qmu:A | 80.5 | 77 | 96 | 77 | 73 | 83 | 77 | 77.1 | 83 | 83 | 71 | 0.7 | 0.47 | 0.47 | 0.48 | 0.82 | 0.66 | 0.62 | 100.0 | 5.0 | 1.0 |
sec | 2000_10 | dssp | 1qmy:A | 68.6 | 54 | 92 | 65 | 52 | 80 | 70 | 69.0 | 63 | 65 | 74 | 7.6 | 0.26 | 0.26 | 0.28 | 0.63 | 0.41 | 0.52 | 100.0 | 12.0 | 6.0 |
sec | 2000_10 | dssp | 1qnr:A | 68.3 | 55 | 85 | 67 | 62 | 80 | 62 | 60.9 | 67 | 68 | 52 | 2.0 | 0.26 | 0.26 | 0.27 | 0.55 | 0.56 | 0.42 | 100.0 | 13.0 | 1.0 |
sec | 2000_10 | dssp | THIS_month:psum | 72.8 | 59 | 72 | 54 | 51 | 75 | 69 | 70.9 | 64.8 | 73.7 | 68.4 | 3.7 | 0.31 | 0.31 | 0.31 | 0.61 | 0.66 | 0.50 | 77.4 | 8.9 | 6.0 |
sec | 2000_10 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2000_10 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2000_10 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |