METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_06 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_06 | dssp | THIS_month:psum | 68.7 | 52 | 61 | 46 | 44 | 72 | 64 | 64.7 | 58.5 | 69.8 | 64 | 3.9 | 0.28 | 0.27 | 0.30 | 0.66 | 0.60 | 0.44 | 77.7 | 10.0 | 7 |
sec | 2002_06 | dssp | 1gr8:A | 77.2 | 84 | 87 | 38 | 78 | 85 | 68 | 66.2 | 79 | 47 | 59 | 1.2 | 0.38 | 0.36 | 0.41 | 0.75 | 0.49 | 0.58 | 100.0 | 1.0 | 8.0 |
sec | 2002_06 | dssp | 1gty:A | 76.2 | 0 | 0 | 63 | 86 | 89 | 70 | 68.6 | 100 | 63 | 74 | 0.0 | 0.24 | 0.24 | 0.25 | 1.0 | 0.54 | 0.54 | 0.0 | 0.00 | 13.0 |
sec | 2002_06 | dssp | 1gw5:B | 80.5 | 91 | 81 | 0 | 0 | 61 | 81 | 76.7 | 85 | 100 | 62 | 0.5 | 0.26 | 0.26 | 0.27 | 0.57 | 1.0 | 0.57 | 100.0 | 8.0 | 0.00 |
sec | 2002_06 | dssp | 1gw5:S | 88.7 | 92 | 95 | 83 | 83 | 87 | 83 | 89.5 | 91 | 89 | 86 | 2.8 | 0.61 | 0.62 | 0.61 | 0.88 | 0.78 | 0.79 | 100.0 | 1.0 | 0.00 |
sec | 2002_06 | dssp | 1kw4:A | 82.9 | 86 | 86 | 0 | 0 | 75 | 75 | 85.7 | 92 | 100 | 73 | 0.0 | 0.30 | 0.30 | 0.30 | 0.61 | 1.0 | 0.61 | 100.0 | 0.00 | 0.00 |
sec | 2002_06 | dssp | 1l1o:C | 83.8 | 79 | 95 | 84 | 82 | 86 | 77 | 87.2 | 87 | 90 | 83 | 2.8 | 0.51 | 0.51 | 0.52 | 0.82 | 0.73 | 0.71 | 100.0 | 4.0 | 0.00 |
sec | 2002_06 | dssp | 1l2r:A | 61.5 | 54 | 80 | 46 | 35 | 74 | 59 | 62.4 | 59 | 45 | 73 | 8.5 | 0.14 | 0.15 | 0.14 | 0.46 | 0.28 | 0.40 | 100.0 | 14.0 | 4.0 |
sec | 2002_06 | dssp | 1l2w:I | 57.9 | 88 | 51 | 0 | 0 | 62 | 64 | 53.3 | 79 | 0 | 58 | 5.2 | 0.16 | 0.13 | 0.19 | 0.48 | 1.0 | 0.26 | 100.0 | 21.0 | 19.0 |
sec | 2002_06 | dssp | 1l3a:C | 65.4 | 42 | 100 | 70 | 66 | 72 | 57 | 69.1 | 40 | 86 | 73 | 3.8 | 0.24 | 0.22 | 0.26 | 0.60 | 0.45 | 0.38 | 100.0 | 12.0 | 2.0 |
sec | 2002_06 | dssp | 1l6p:A | 61.2 | 0 | 0 | 64 | 69 | 65 | 50 | 51.0 | 0 | 52 | 56 | 5.7 | 0.09 | 0.09 | 0.11 | 1.0 | 0.20 | 0.31 | 0.0 | 5.0 | 4.0 |
sec | 2002_06 | dssp | 1l8r:A | 70.3 | 62 | 87 | 91 | 70 | 64 | 56 | 76.6 | 78 | 92 | 63 | 0.9 | 0.38 | 0.38 | 0.38 | 0.59 | 0.73 | 0.38 | 0.0 | 11.0 | 6.0 |
sec | 2002_06 | dssp | 1l8y:A | 81.9 | 78 | 93 | 0 | 0 | 88 | 65 | 78.4 | 77 | 100 | 82 | 0.0 | 0.33 | 0.35 | 0.32 | 0.63 | 1.0 | 0.63 | 100.0 | 10.0 | 0.00 |
sec | 2002_06 | dssp | 1l9v:A | 67.1 | 63 | 92 | 70 | 40 | 69 | 67 | 59.8 | 63 | 68 | 53 | 5.4 | 0.26 | 0.28 | 0.26 | 0.64 | 0.41 | 0.44 | 100.0 | 13.0 | 11.0 |
sec | 2002_06 | dssp | 1lf7:A | 71.4 | 0 | 0 | 100 | 78 | 78 | 65 | 61.5 | 0 | 96 | 60 | 0.0 | 0.54 | 0.44 | 0.66 | 1.0 | 0.82 | 0.44 | 100.0 | 19.0 | 9.0 |
sec | 2002_06 | dssp | 1ln1:A | 80.8 | 77 | 88 | 83 | 88 | 80 | 69 | 84.7 | 81 | 92 | 77 | 0.0 | 0.49 | 0.49 | 0.50 | 0.77 | 0.76 | 0.59 | 100.0 | 2.0 | 2.0 |
sec | 2002_06 | dssp | 1ls7:A | 61.6 | 55 | 75 | 0 | 0 | 70 | 50 | 44.8 | 42 | 100 | 51 | 0.0 | 0.05 | 0.05 | 0.05 | 0.26 | 1.0 | 0.26 | 0.0 | 15.0 | 0.00 |
sec | 2002_06 | dssp | 1lub:A | 26.0 | 0 | 0 | 0 | 0 | 50 | 54 | 14.7 | 0 | 0 | 28 | 26.0 | 0.14 | 0.12 | 0.17 | 1.0 | -0.38 | 0.04 | 100.0 | 36.0 | 40.0 |
sec | 2002_06 | dssp | 1luo:A | 43.6 | 0 | 0 | 36 | 27 | 58 | 57 | 35.9 | 0 | 38 | 41 | 8.4 | 0.01 | 0.01 | 0.01 | -0.09 | -0.01 | 0.02 | 100.0 | 9.0 | 8.0 |
sec | 2002_06 | dssp | THIS_month:psum | 68.7 | 52 | 61 | 46 | 44 | 72 | 64 | 64.7 | 58.5 | 69.8 | 64 | 3.9 | 0.28 | 0.27 | 0.30 | 0.66 | 0.60 | 0.44 | 77.7 | 10.0 | 7 |
sec | 2002_06 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |