METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2000_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_08 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2000_08 | dssp | THIS_month:psum | 76.6 | 67 | 81 | 61 | 64 | 81 | 72 | 73.5 | 74.8 | 68.9 | 72.0 | 2.9 | 0.37 | 0.36 | 0.37 | 0.68 | 0.57 | 0.57 | 82.6 | 6.0 | 4.3 |
sec | 2000_08 | dssp | 1c3g:A | 77.6 | 50 | 80 | 81 | 78 | 79 | 76 | 76.8 | 56 | 85 | 73 | 1.7 | 0.32 | 0.32 | 0.34 | 0.60 | 0.63 | 0.58 | 100.0 | 3.0 | 1.0 |
sec | 2000_08 | dssp | 1crz:A | 76.7 | 28 | 91 | 79 | 78 | 84 | 74 | 72.1 | 22 | 80 | 79 | 2.2 | 0.30 | 0.28 | 0.33 | 0.48 | 0.62 | 0.58 | 100.0 | 6.0 | 0.00 |
sec | 2000_08 | dssp | 1de6:A | 75.0 | 81 | 82 | 38 | 47 | 78 | 72 | 71.6 | 83 | 44 | 65 | 4.0 | 0.28 | 0.28 | 0.29 | 0.66 | 0.36 | 0.57 | 100.0 | 0.00 | 2.0 |
sec | 2000_08 | dssp | 1di1:A | 76.9 | 73 | 92 | 0 | 0 | 84 | 59 | 57.5 | 55 | 100 | 65 | 2.3 | 0.25 | 0.28 | 0.22 | 0.53 | 1.0 | 0.56 | 100.0 | 14.0 | 2.0 |
sec | 2000_08 | dssp | 1dkq:A | 72.2 | 65 | 85 | 56 | 67 | 84 | 65 | 59.8 | 51 | 69 | 66 | 2.6 | 0.28 | 0.28 | 0.29 | 0.60 | 0.55 | 0.52 | 100.0 | 9.0 | 2.0 |
sec | 2000_08 | dssp | 1eej:A | 84.3 | 83 | 93 | 82 | 85 | 86 | 76 | 87.5 | 88 | 84 | 87 | 0.4 | 0.54 | 0.54 | 0.54 | 0.81 | 0.78 | 0.68 | 100.0 | 4.0 | 0.00 |
sec | 2000_08 | dssp | 1eem:A | 86.1 | 83 | 96 | 80 | 73 | 91 | 78 | 82.6 | 82 | 85 | 81 | 0.8 | 0.53 | 0.54 | 0.53 | 0.79 | 0.75 | 0.73 | 100.0 | 7.0 | 0.00 |
sec | 2000_08 | dssp | 1eg3:A | 80.8 | 85 | 94 | 28 | 40 | 85 | 68 | 82.0 | 92 | 26 | 76 | 1.5 | 0.41 | 0.41 | 0.42 | 0.77 | 0.28 | 0.63 | 100.0 | 6.0 | 2.0 |
sec | 2000_08 | dssp | 1ej0:A | 88.9 | 91 | 95 | 72 | 100 | 100 | 78 | 96.4 | 100 | 88 | 99 | 1.6 | 0.68 | 0.67 | 0.70 | 0.89 | 0.80 | 0.82 | 0.0 | 1.0 | 7.0 |
sec | 2000_08 | dssp | 1emw:A | 84.1 | 100 | 72 | 81 | 81 | 80 | 90 | 79.9 | 100 | 88 | 71 | 0.0 | 0.55 | 0.57 | 0.54 | 0.81 | 0.75 | 0.68 | 100.0 | 6.0 | 0.00 |
sec | 2000_08 | dssp | 1eok:A | 62.8 | 38 | 83 | 86 | 40 | 73 | 70 | 63.9 | 49 | 89 | 66 | 9.5 | 0.20 | 0.21 | 0.20 | 0.44 | 0.48 | 0.44 | 100.0 | 19.0 | 17.0 |
sec | 2000_08 | dssp | 1es6:A | 71.6 | 55 | 80 | 55 | 88 | 92 | 63 | 59.8 | 73 | 49 | 66 | 2.0 | 0.33 | 0.30 | 0.36 | 0.60 | 0.58 | 0.53 | 100.0 | 6.0 | 13.0 |
sec | 2000_08 | dssp | 1evx:A | 56.2 | 13 | 33 | 54 | 47 | 73 | 64 | 56.8 | 20 | 66 | 62 | 9.8 | 0.07 | 0.07 | 0.08 | 0.10 | 0.26 | 0.32 | 100.0 | 11.0 | 4.0 |
sec | 2000_08 | dssp | 1ew4:A | 86.8 | 96 | 94 | 82 | 82 | 82 | 84 | 89.6 | 100 | 94 | 78 | 0.9 | 0.61 | 0.62 | 0.62 | 0.93 | 0.74 | 0.73 | 100.0 | 0.00 | 0.00 |
sec | 2000_08 | dssp | 1ez1:A | 85.6 | 88 | 94 | 70 | 85 | 89 | 78 | 83.6 | 93 | 67 | 80 | 0.0 | 0.56 | 0.56 | 0.58 | 0.85 | 0.73 | 0.71 | 100.0 | 2.0 | 3.0 |
sec | 2000_08 | dssp | 1ezg:A | 64.6 | 0 | 0 | 26 | 41 | 76 | 78 | 62.0 | 100 | 27 | 72 | 1.2 | 0.02 | 0.03 | 0.02 | 1.0 | 0.18 | 0.07 | 100.0 | 10.0 | 8.0 |
sec | 2000_08 | dssp | 1f0k:A | 80.6 | 80 | 86 | 81 | 83 | 80 | 73 | 81.7 | 81 | 90 | 79 | 1.1 | 0.45 | 0.45 | 0.45 | 0.69 | 0.79 | 0.61 | 100.0 | 3.0 | 0.00 |
sec | 2000_08 | dssp | 1f0x:A | 74.9 | 68 | 78 | 61 | 60 | 85 | 79 | 71.8 | 69 | 63 | 76 | 8.1 | 0.31 | 0.31 | 0.32 | 0.61 | 0.50 | 0.66 | 0.0 | 4.0 | 0.00 |
sec | 2000_08 | dssp | 1f2t:A | 77.8 | 76 | 100 | 89 | 72 | 66 | 78 | 74.4 | 100 | 94 | 55 | 0.0 | 0.46 | 0.45 | 0.48 | 0.86 | 0.63 | 0.54 | 100.0 | 3.0 | 10.0 |
sec | 2000_08 | dssp | 1f2t:B | 74.8 | 85 | 75 | 53 | 95 | 78 | 63 | 76.5 | 91 | 61 | 68 | 7.6 | 0.36 | 0.35 | 0.37 | 0.62 | 0.64 | 0.59 | 0.0 | 6.0 | 12.0 |
sec | 2000_08 | dssp | 1fa0:A | 79.2 | 82 | 87 | 50 | 70 | 85 | 72 | 73.4 | 78 | 57 | 72 | 2.8 | 0.38 | 0.37 | 0.39 | 0.73 | 0.53 | 0.63 | 100.0 | 2.0 | 4.0 |
sec | 2000_08 | dssp | 1fgx:A | 71.0 | 65 | 81 | 66 | 56 | 75 | 74 | 69.8 | 74 | 72 | 66 | 1.4 | 0.28 | 0.28 | 0.28 | 0.65 | 0.49 | 0.44 | 100.0 | 4.0 | 3.0 |
sec | 2000_08 | dssp | 1qkr:A | 74.6 | 76 | 94 | 50 | 4 | 70 | 62 | 62.1 | 65 | 8 | 55 | 6.6 | 0.25 | 0.30 | 0.21 | 0.58 | 0.12 | 0.53 | 0.0 | 13.0 | 10.0 |
sec | 2000_08 | dssp | THIS_month:psum | 76.6 | 67 | 81 | 61 | 64 | 81 | 72 | 73.5 | 74.8 | 68.9 | 72.0 | 2.9 | 0.37 | 0.36 | 0.37 | 0.68 | 0.57 | 0.57 | 82.6 | 6.0 | 4.3 |
sec | 2000_08 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2000_08 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2000_08 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |