METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2001_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_07 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2001_07 | dssp | THIS_month:psum | 76.8 | 71 | 86 | 47 | 47 | 82 | 70 | 68.9 | 69.5 | 63.3 | 68.2 | 2.2 | 0.38 | 0.38 | 0.39 | 0.64 | 0.74 | 0.56 | 90.4 | 8.6 | 5.6 |
sec | 2001_07 | dssp | 1dcj:A | 85.2 | 73 | 100 | 100 | 76 | 84 | 84 | 89.3 | 95 | 97 | 83 | 0.0 | 0.64 | 0.64 | 0.65 | 0.81 | 0.83 | 0.70 | 100.0 | 7.0 | 7.0 |
sec | 2001_07 | dssp | 1e44:B | 58.3 | 9 | 50 | 3 | 100 | 98 | 58 | 13.6 | 13 | 3 | 19 | 0.0 | 0.09 | 0.03 | 0.17 | 0.17 | 0.15 | 0.08 | 100.0 | 9.0 | 30.0 |
sec | 2001_07 | dssp | 1faz:A | 59.8 | 45 | 85 | 0 | 0 | 84 | 48 | 45.6 | 42 | 100 | 53 | 0.8 | 0.08 | 0.09 | 0.08 | 0.32 | 1.0 | 0.31 | 0.0 | 29.0 | 1.0 |
sec | 2001_07 | dssp | 1g7o:A | 70.2 | 67 | 85 | 50 | 50 | 78 | 58 | 55.0 | 46 | 64 | 76 | 2.7 | 0.23 | 0.23 | 0.23 | 0.51 | 0.45 | 0.46 | 100.0 | 12.0 | 0.00 |
sec | 2001_07 | dssp | 1gc5:A | 73.7 | 85 | 77 | 60 | 65 | 64 | 71 | 79.3 | 91 | 59 | 75 | 5.7 | 0.31 | 0.31 | 0.32 | 0.64 | 0.54 | 0.52 | 100.0 | 4.0 | 1.0 |
sec | 2001_07 | dssp | 1h5p:A | 62.1 | 34 | 71 | 54 | 46 | 84 | 67 | 54.9 | 36 | 56 | 63 | 11.5 | 0.19 | 0.18 | 0.20 | 0.36 | 0.33 | 0.49 | 100.0 | 15.0 | 4.0 |
sec | 2001_07 | dssp | 1hr6:A | 84.7 | 86 | 91 | 75 | 82 | 86 | 78 | 86.3 | 90 | 89 | 80 | 0.6 | 0.52 | 0.52 | 0.53 | 0.81 | 0.75 | 0.70 | 100.0 | 2.0 | 1.0 |
sec | 2001_07 | dssp | 1hr7:A | 84.9 | 86 | 91 | 76 | 82 | 86 | 79 | 86.8 | 90 | 91 | 81 | 0.6 | 0.52 | 0.53 | 0.53 | 0.81 | 0.75 | 0.70 | 100.0 | 2.0 | 1.0 |
sec | 2001_07 | dssp | 1hr8:A | 88.2 | 90 | 92 | 82 | 86 | 88 | 84 | 88.4 | 91 | 88 | 85 | 0.3 | 0.60 | 0.60 | 0.61 | 0.86 | 0.80 | 0.76 | 100.0 | 1.0 | 0.00 |
sec | 2001_07 | dssp | 1hr9:A | 88.2 | 90 | 91 | 84 | 86 | 87 | 85 | 88.9 | 91 | 90 | 85 | 0.3 | 0.60 | 0.60 | 0.60 | 0.85 | 0.81 | 0.76 | 100.0 | 0.00 | 0.00 |
sec | 2001_07 | dssp | 1i3j:A | 47.9 | 9 | 100 | 90 | 20 | 61 | 75 | 37.8 | 10 | 63 | 49 | 18.7 | 0.12 | 0.11 | 0.13 | 0.26 | 0.28 | 0.34 | 0.0 | 29.0 | 39.0 |
sec | 2001_07 | dssp | 1ijx:A | 78.4 | 82 | 87 | 0 | 0 | 90 | 73 | 54.9 | 67 | 0 | 52 | 0.0 | 0.40 | 0.34 | 0.47 | 0.74 | 1.0 | 0.58 | 100.0 | 2.0 | 9.0 |
sec | 2001_07 | dssp | 1ijy:A | 82.0 | 76 | 93 | 0 | 0 | 95 | 75 | 56.8 | 68 | 0 | 49 | 0.0 | 0.43 | 0.37 | 0.49 | 0.75 | 1.0 | 0.65 | 100.0 | 7.0 | 5.0 |
sec | 2001_07 | dssp | 1j8f:A | 73.3 | 65 | 83 | 100 | 83 | 76 | 61 | 67.0 | 52 | 100 | 85 | 0.0 | 0.41 | 0.42 | 0.41 | 0.52 | 0.90 | 0.46 | 100.0 | 11.0 | 2.0 |
sec | 2001_07 | dssp | 1jc5:A | 75.9 | 74 | 95 | 84 | 64 | 69 | 82 | 81.6 | 77 | 83 | 81 | 3.4 | 0.39 | 0.39 | 0.41 | 0.80 | 0.56 | 0.58 | 100.0 | 4.0 | 11.0 |
sec | 2001_07 | dssp | 1jei:A | 86.8 | 90 | 78 | 0 | 0 | 84 | 93 | 100.0 | 100 | 100 | 100 | 0.0 | 0.44 | 0.45 | 0.43 | 0.73 | 1.0 | 0.73 | 100.0 | 5.0 | 0.00 |
sec | 2001_07 | dssp | 1jek:A | 90.0 | 89 | 100 | 0 | 0 | 100 | 33 | 44.0 | 43 | 100 | 50 | 0.0 | 0.38 | 0.52 | 0.24 | 0.54 | 1.0 | 0.54 | 100.0 | 9.0 | 0.00 |
sec | 2001_07 | dssp | 1jfi:A | 81.7 | 97 | 80 | 0 | 0 | 60 | 85 | 83.5 | 100 | 0 | 60 | 1.6 | 0.34 | 0.28 | 0.40 | 0.64 | 1.0 | 0.61 | 100.0 | 13.0 | 3.0 |
sec | 2001_07 | dssp | 1jfi:B | 83.0 | 80 | 100 | 0 | 0 | 100 | 54 | 78.7 | 80 | 0 | 76 | 0.0 | 0.43 | 0.47 | 0.41 | 0.68 | 1.0 | 0.65 | 100.0 | 15.0 | 1.0 |
sec | 2001_07 | dssp | 1jfy:A | 79.7 | 94 | 88 | 68 | 70 | 69 | 74 | 79.8 | 98 | 68 | 66 | 0.0 | 0.50 | 0.50 | 0.51 | 0.85 | 0.61 | 0.56 | 100.0 | 2.0 | 0.00 |
sec | 2001_07 | dssp | 1jg8:A | 79.0 | 81 | 89 | 69 | 86 | 80 | 66 | 75.6 | 81 | 80 | 65 | 0.0 | 0.45 | 0.45 | 0.46 | 0.73 | 0.73 | 0.56 | 100.0 | 4.0 | 3.0 |
sec | 2001_07 | dssp | THIS_month:psum | 76.8 | 71 | 86 | 47 | 47 | 82 | 70 | 68.9 | 69.5 | 63.3 | 68.2 | 2.2 | 0.38 | 0.38 | 0.39 | 0.64 | 0.74 | 0.56 | 90.4 | 8.6 | 5.6 |
sec | 2001_07 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_07 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |