METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_02 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_02 | dssp | THIS_month:psum | 71.5 | 56 | 72 | 42 | 39 | 75 | 67 | 62.6 | 59.1 | 71.4 | 64.4 | 2.8 | 0.27 | 0.27 | 0.27 | 0.67 | 0.66 | 0.45 | 70.5 | 8.6 | 6.1 |
sec | 2002_02 | dssp | 1eq1:A | 80.7 | 96 | 80 | 0 | 0 | 36 | 80 | 55.3 | 56 | 100 | 50 | 0.0 | 0.19 | 0.15 | 0.24 | 0.44 | 1.0 | 0.44 | 100.0 | 14.0 | 0.00 |
sec | 2002_02 | dssp | 1h67:A | 83.3 | 82 | 90 | 0 | 0 | 84 | 73 | 87.7 | 91 | 100 | 81 | 0.0 | 0.34 | 0.35 | 0.34 | 0.65 | 1.0 | 0.65 | 100.0 | 5.0 | 0.00 |
sec | 2002_02 | dssp | 1i2v:A | 45.5 | 0 | 0 | 58 | 30 | 52 | 61 | 35.9 | 0 | 42 | 42 | 9.0 | 0.00 | 0.01 | 0.01 | 1.0 | 0.07 | 0.09 | 100.0 | 15.0 | 25.0 |
sec | 2002_02 | dssp | 1itp:A | 58.4 | 47 | 100 | 50 | 52 | 75 | 51 | 57.5 | 52 | 61 | 58 | 6.4 | 0.22 | 0.21 | 0.23 | 0.62 | 0.26 | 0.32 | 100.0 | 15.0 | 1.0 |
sec | 2002_02 | dssp | 1j7x:A | 83.1 | 83 | 90 | 91 | 72 | 78 | 83 | 79.7 | 81 | 86 | 75 | 0.9 | 0.51 | 0.52 | 0.51 | 0.79 | 0.76 | 0.67 | 0.0 | 2.0 | 5.0 |
sec | 2002_02 | dssp | 1jeo:A | 75.7 | 70 | 95 | 91 | 56 | 77 | 66 | 68.0 | 60 | 85 | 77 | 3.9 | 0.39 | 0.41 | 0.38 | 0.68 | 0.66 | 0.56 | 0.0 | 14.0 | 8.0 |
sec | 2002_02 | dssp | 1jkz:A | 41.3 | 0 | 0 | 43 | 46 | 63 | 38 | 34.8 | 0 | 57 | 35 | 2.1 | 0.06 | 0.04 | 0.08 | 1.0 | 0.17 | -0.07 | 100.0 | 23.0 | 2.0 |
sec | 2002_02 | dssp | 1jmu:B | 62.0 | 58 | 77 | 50 | 46 | 70 | 58 | 45.6 | 39 | 51 | 50 | 4.2 | 0.23 | 0.23 | 0.23 | 0.49 | 0.36 | 0.33 | 100.0 | 9.0 | 1.0 |
sec | 2002_02 | dssp | 1jy1:A | 69.5 | 55 | 68 | 64 | 80 | 80 | 66 | 62.0 | 61 | 60 | 63 | 2.3 | 0.27 | 0.27 | 0.29 | 0.48 | 0.64 | 0.44 | 100.0 | 5.0 | 4.0 |
sec | 2002_02 | dssp | 1k0s:A | 77.5 | 28 | 100 | 90 | 75 | 75 | 78 | 73.0 | 35 | 86 | 67 | 0.6 | 0.36 | 0.34 | 0.40 | 0.51 | 0.67 | 0.56 | 0.0 | 6.0 | 8.0 |
sec | 2002_02 | dssp | 1k1f:A | 80.6 | 85 | 87 | 0 | 0 | 68 | 65 | 61.2 | 56 | 100 | 83 | 0.0 | 0.22 | 0.23 | 0.22 | 0.53 | 1.0 | 0.53 | 100.0 | 1.0 | 0.00 |
sec | 2002_02 | dssp | 1k28:D | 68.2 | 38 | 76 | 70 | 62 | 79 | 70 | 63.7 | 42 | 64 | 72 | 7.8 | 0.21 | 0.20 | 0.22 | 0.47 | 0.46 | 0.52 | 100.0 | 9.0 | 4.0 |
sec | 2002_02 | dssp | 1k6w:A | 77.5 | 81 | 83 | 60 | 89 | 83 | 69 | 78.8 | 89 | 68 | 74 | 0.9 | 0.41 | 0.40 | 0.42 | 0.72 | 0.67 | 0.57 | 0.0 | 0.00 | 7.0 |
sec | 2002_02 | dssp | 1kbh:A | 85.1 | 82 | 92 | 0 | 0 | 88 | 76 | 88.6 | 89 | 100 | 86 | 0.0 | 0.40 | 0.41 | 0.39 | 0.70 | 1.0 | 0.70 | 100.0 | 6.0 | 0.00 |
sec | 2002_02 | dssp | 1kps:B | 80.1 | 71 | 98 | 0 | 0 | 94 | 82 | 89.8 | 85 | 100 | 96 | 10.2 | 0.48 | 0.58 | 0.40 | 0.67 | 1.0 | 0.80 | 0.0 | 17.0 | 11.0 |
sec | 2002_02 | dssp | 1kqi:A | 73.7 | 0 | 0 | 0 | 0 | 100 | 73 | 16.1 | 100 | 0 | 21 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 0.00 | 26.0 |
sec | 2002_02 | dssp | 1kwh:A | 74.6 | 76 | 89 | 51 | 66 | 81 | 65 | 66.7 | 70 | 55 | 66 | 0.4 | 0.35 | 0.34 | 0.36 | 0.70 | 0.52 | 0.51 | 100.0 | 6.0 | 3.0 |
sec | 2002_02 | dssp | THIS_month:psum | 71.5 | 56 | 72 | 42 | 39 | 75 | 67 | 62.6 | 59.1 | 71.4 | 64.4 | 2.8 | 0.27 | 0.27 | 0.27 | 0.67 | 0.66 | 0.45 | 70.5 | 8.6 | 6.1 |
sec | 2002_02 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |