METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2001_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_08 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_08 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2001_08 | dssp | THIS_month:psum | 74.3 | 65 | 75 | 49 | 52 | 76 | 71 | 69.2 | 67.9 | 66.6 | 68.7 | 2.3 | 0.33 | 0.32 | 0.33 | 0.64 | 0.61 | 0.51 | 89.4 | 8.3 | 4.1 |
sec | 2001_08 | dssp | 1e5r:A | 56.7 | 53 | 77 | 40 | 50 | 66 | 47 | 61.1 | 76 | 24 | 74 | 0.0 | 0.19 | 0.19 | 0.20 | 0.45 | 0.35 | 0.16 | 100.0 | 13.0 | 3.0 |
sec | 2001_08 | dssp | 1e5s:A | 56.7 | 53 | 77 | 40 | 50 | 66 | 47 | 61.1 | 76 | 24 | 74 | 0.0 | 0.19 | 0.19 | 0.20 | 0.45 | 0.35 | 0.16 | 100.0 | 13.0 | 3.0 |
sec | 2001_08 | dssp | 1e6f:A | 79.1 | 0 | 0 | 82 | 79 | 83 | 78 | 79.2 | 0 | 84 | 82 | 0.7 | 0.30 | 0.28 | 0.34 | 1.0 | 0.65 | 0.59 | 100.0 | 4.0 | 1.0 |
sec | 2001_08 | dssp | 1e89:A | 76.3 | 79 | 75 | 53 | 81 | 83 | 75 | 73.3 | 75 | 59 | 76 | 5.7 | 0.35 | 0.35 | 0.37 | 0.62 | 0.59 | 0.63 | 100.0 | 2.0 | 6.0 |
sec | 2001_08 | dssp | 1fg3:A | 80.8 | 80 | 83 | 76 | 86 | 82 | 76 | 72.2 | 87 | 84 | 59 | 0.2 | 0.45 | 0.45 | 0.46 | 0.70 | 0.77 | 0.62 | 100.0 | 1.0 | 1.0 |
sec | 2001_08 | dssp | 1fm2:B | 72.5 | 70 | 83 | 55 | 78 | 84 | 66 | 64.8 | 72 | 65 | 60 | 0.9 | 0.33 | 0.31 | 0.34 | 0.69 | 0.55 | 0.49 | 100.0 | 4.0 | 8.0 |
sec | 2001_08 | dssp | 1g2r:A | 73.4 | 78 | 76 | 66 | 70 | 71 | 71 | 62.9 | 46 | 78 | 71 | 3.1 | 0.32 | 0.33 | 0.33 | 0.62 | 0.61 | 0.51 | 100.0 | 1.0 | 1.0 |
sec | 2001_08 | dssp | 1h75:A | 81.6 | 89 | 96 | 76 | 68 | 77 | 77 | 87.4 | 100 | 73 | 83 | 0.0 | 0.53 | 0.54 | 0.53 | 0.88 | 0.63 | 0.61 | 100.0 | 2.0 | 2.0 |
sec | 2001_08 | dssp | 1h7y:A | 78.0 | 86 | 90 | 80 | 55 | 72 | 89 | 68.7 | 88 | 64 | 62 | 4.1 | 0.45 | 0.46 | 0.44 | 0.84 | 0.54 | 0.65 | 100.0 | 1.0 | 10.0 |
sec | 2001_08 | dssp | 1hi9:A | 79.6 | 88 | 85 | 69 | 71 | 78 | 79 | 73.4 | 89 | 77 | 63 | 2.5 | 0.44 | 0.45 | 0.45 | 0.80 | 0.60 | 0.63 | 100.0 | 1.0 | 0.00 |
sec | 2001_08 | dssp | 1hqb:A | 86.2 | 97 | 80 | 0 | 0 | 78 | 97 | 71.2 | 100 | 100 | 60 | 0.0 | 0.50 | 0.54 | 0.47 | 0.78 | 1.0 | 0.74 | 0.0 | 8.0 | 2.0 |
sec | 2001_08 | dssp | 1hy9:A | 68.3 | 0 | 0 | 30 | 75 | 80 | 80 | 41.5 | 100 | 30 | 45 | 2.4 | 0.10 | 0.11 | 0.09 | 1.0 | 0.38 | 0.20 | 100.0 | 14.0 | 14.0 |
sec | 2001_08 | dssp | 1i42:A | 89.9 | 92 | 86 | 84 | 91 | 92 | 90 | 91.1 | 95 | 92 | 89 | 0.0 | 0.63 | 0.64 | 0.64 | 0.87 | 0.83 | 0.79 | 100.0 | 1.0 | 2.0 |
sec | 2001_08 | dssp | 1i5k:C | 69.2 | 61 | 100 | 0 | 0 | 100 | 38 | 50.0 | 45 | 100 | 90 | 0.0 | 0.27 | 0.32 | 0.23 | 0.48 | 1.0 | 0.48 | 100.0 | 30.0 | 0.00 |
sec | 2001_08 | dssp | 1i7c:A | 69.7 | 26 | 87 | 78 | 68 | 82 | 68 | 67.0 | 33 | 86 | 64 | 8.1 | 0.25 | 0.23 | 0.28 | 0.43 | 0.53 | 0.56 | 100.0 | 14.0 | 5.0 |
sec | 2001_08 | dssp | 1i7m:A | 63.4 | 26 | 85 | 68 | 60 | 85 | 62 | 53.3 | 22 | 71 | 64 | 11.5 | 0.21 | 0.20 | 0.24 | 0.39 | 0.42 | 0.52 | 100.0 | 18.0 | 4.0 |
sec | 2001_08 | dssp | 1ic3:A | 69.0 | 87 | 62 | 60 | 64 | 62 | 77 | 69.1 | 97 | 55 | 62 | 2.7 | 0.27 | 0.28 | 0.28 | 0.62 | 0.52 | 0.44 | 100.0 | 10.0 | 1.0 |
sec | 2001_08 | dssp | 1ihr:A | 69.9 | 100 | 60 | 59 | 95 | 70 | 56 | 85.6 | 100 | 86 | 77 | 2.7 | 0.40 | 0.42 | 0.39 | 0.72 | 0.61 | 0.42 | 100.0 | 10.0 | 19.0 |
sec | 2001_08 | dssp | 1ip9:A | 68.2 | 47 | 100 | 90 | 55 | 67 | 70 | 63.9 | 71 | 75 | 56 | 1.1 | 0.36 | 0.35 | 0.37 | 0.63 | 0.59 | 0.38 | 100.0 | 12.0 | 15.0 |
sec | 2001_08 | dssp | 1ipg:A | 69.4 | 47 | 100 | 90 | 58 | 69 | 70 | 66.5 | 71 | 83 | 57 | 1.1 | 0.37 | 0.36 | 0.39 | 0.63 | 0.61 | 0.41 | 100.0 | 12.0 | 14.0 |
sec | 2001_08 | dssp | 1jb0:C | 76.2 | 30 | 100 | 76 | 68 | 88 | 77 | 77.8 | 38 | 81 | 86 | 0.0 | 0.35 | 0.31 | 0.39 | 0.52 | 0.64 | 0.47 | 100.0 | 11.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:D | 68.1 | 36 | 60 | 64 | 58 | 81 | 75 | 60.6 | 29 | 66 | 72 | 7.2 | 0.18 | 0.18 | 0.19 | 0.37 | 0.44 | 0.50 | 100.0 | 7.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:F | 57.4 | 55 | 78 | 28 | 18 | 64 | 46 | 43.4 | 46 | 7 | 41 | 1.4 | 0.10 | 0.11 | 0.10 | 0.35 | 0.17 | 0.19 | 0.0 | 17.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:I | 55.3 | 56 | 73 | 0 | 0 | 58 | 46 | 51.9 | 50 | 0 | 62 | 10.5 | 0.11 | 0.13 | 0.10 | 0.16 | -0.05 | 0.26 | 100.0 | 15.0 | 7.0 |
sec | 2001_08 | dssp | 1jb0:J | 78.0 | 89 | 80 | 0 | 0 | 58 | 70 | 64.9 | 83 | 0 | 43 | 2.4 | 0.19 | 0.17 | 0.22 | 0.46 | 1.0 | 0.50 | 100.0 | 7.0 | 2.0 |
sec | 2001_08 | dssp | 1jb0:K | 78.1 | 100 | 69 | 0 | 0 | 56 | 100 | 88.7 | 96 | 100 | 81 | 0.0 | 0.39 | 0.36 | 0.42 | 0.62 | 1.0 | 0.62 | 100.0 | 21.0 | 0.00 |
sec | 2001_08 | dssp | 1jb0:L | 66.9 | 63 | 91 | 0 | 0 | 85 | 48 | 55.3 | 56 | 0 | 59 | 3.3 | 0.19 | 0.21 | 0.19 | 0.47 | -0.03 | 0.44 | 100.0 | 21.0 | 0.00 |
sec | 2001_08 | dssp | 1jb0:M | 93.5 | 96 | 96 | 0 | 0 | 83 | 83 | 96.8 | 100 | 100 | 83 | 0.0 | 0.54 | 0.55 | 0.55 | 0.79 | 1.0 | 0.79 | 100.0 | 0.00 | 0.00 |
sec | 2001_08 | dssp | 1jb0:X | 86.2 | 100 | 84 | 0 | 0 | 50 | 100 | 93.1 | 100 | 100 | 75 | 0.0 | 0.44 | 0.36 | 0.52 | 0.64 | 1.0 | 0.64 | 100.0 | 13.0 | 0.00 |
sec | 2001_08 | dssp | 1jeq:A | 71.3 | 75 | 71 | 62 | 68 | 71 | 72 | 75.2 | 78 | 79 | 69 | 6.7 | 0.27 | 0.27 | 0.27 | 0.56 | 0.56 | 0.54 | 0.0 | 2.0 | 1.0 |
sec | 2001_08 | dssp | 1jeq:B | 79.9 | 70 | 91 | 85 | 75 | 85 | 75 | 71.7 | 53 | 91 | 86 | 1.7 | 0.44 | 0.44 | 0.45 | 0.71 | 0.74 | 0.63 | 100.0 | 8.0 | 2.0 |
sec | 2001_08 | dssp | 1jey:B | 78.4 | 76 | 76 | 62 | 80 | 88 | 78 | 71.7 | 62 | 72 | 81 | 5.8 | 0.37 | 0.37 | 0.39 | 0.65 | 0.63 | 0.68 | 0.0 | 0.00 | 5.0 |
sec | 2001_08 | dssp | 1jj2:G | 79.3 | 82 | 90 | 0 | 0 | 66 | 50 | 65.8 | 69 | 100 | 53 | 0.0 | 0.16 | 0.18 | 0.15 | 0.44 | 1.0 | 0.44 | 100.0 | 6.0 | 0.00 |
sec | 2001_08 | dssp | 1jjd:A | 76.9 | 0 | 0 | 16 | 33 | 95 | 79 | 52.4 | 0 | 16 | 64 | 0.0 | 0.04 | 0.02 | 0.07 | 1.0 | 0.16 | 0.07 | 100.0 | 9.0 | 5.0 |
sec | 2001_08 | dssp | 1jjy:A | 81.7 | 83 | 93 | 60 | 66 | 85 | 72 | 77.6 | 83 | 67 | 72 | 1.2 | 0.43 | 0.43 | 0.43 | 0.76 | 0.58 | 0.65 | 100.0 | 5.0 | 1.0 |
sec | 2001_08 | dssp | 1job:A | 77.2 | 80 | 69 | 70 | 93 | 81 | 72 | 70.0 | 64 | 77 | 68 | 1.8 | 0.41 | 0.41 | 0.41 | 0.66 | 0.72 | 0.58 | 100.0 | 3.0 | 8.0 |
sec | 2001_08 | dssp | 1jod:A | 73.8 | 73 | 82 | 63 | 86 | 82 | 63 | 64.7 | 55 | 70 | 67 | 0.6 | 0.37 | 0.36 | 0.38 | 0.71 | 0.62 | 0.50 | 100.0 | 2.0 | 9.0 |
sec | 2001_08 | dssp | 1jru:A | 88.8 | 80 | 80 | 88 | 95 | 91 | 88 | 86.2 | 76 | 96 | 84 | 0.0 | 0.61 | 0.61 | 0.62 | 0.75 | 0.88 | 0.77 | 100.0 | 0.00 | 2.0 |
sec | 2001_08 | dssp | THIS_month:psum | 74.3 | 65 | 75 | 49 | 52 | 76 | 71 | 69.2 | 67.9 | 66.6 | 68.7 | 2.3 | 0.33 | 0.32 | 0.33 | 0.64 | 0.61 | 0.51 | 89.4 | 8.3 | 4.1 |
sec | 2001_08 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_08 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_08 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |