METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_04 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_04 | dssp | THIS_month:psum | 75.5 | 62 | 71 | 47 | 48 | 75 | 72 | 71.0 | 68.0 | 79.1 | 65.9 | 0.89 | 0.35 | 0.33 | 0.36 | 0.68 | 0.67 | 0.51 | 85.7 | 6.2 | 4.7 |
sec | 2002_04 | dssp | 1ich:A | 90.8 | 90 | 96 | 0 | 0 | 91 | 77 | 98.0 | 100 | 100 | 92 | 0.0 | 0.52 | 0.54 | 0.50 | 0.78 | 1.0 | 0.78 | 100.0 | 4.0 | 0.00 |
sec | 2002_04 | dssp | 1icz:A | 47.0 | 72 | 30 | 40 | 14 | 40 | 81 | 35.3 | 59 | 25 | 32 | 2.0 | 0.05 | 0.07 | 0.05 | 0.26 | 0.15 | 0.12 | 100.0 | 26.0 | 10.0 |
sec | 2002_04 | dssp | 1jki:A | 76.6 | 72 | 92 | 70 | 73 | 83 | 69 | 70.7 | 70 | 75 | 67 | 2.4 | 0.39 | 0.39 | 0.40 | 0.74 | 0.62 | 0.58 | 0.0 | 7.0 | 0.00 |
sec | 2002_04 | dssp | 1jww:A | 80.0 | 86 | 95 | 85 | 66 | 72 | 81 | 86.6 | 100 | 87 | 77 | 0.0 | 0.51 | 0.52 | 0.52 | 0.87 | 0.65 | 0.59 | 100.0 | 2.0 | 7.0 |
sec | 2002_04 | dssp | 1jyh:A | 82.6 | 75 | 96 | 79 | 90 | 91 | 71 | 86.4 | 80 | 95 | 80 | 0.6 | 0.52 | 0.51 | 0.53 | 0.81 | 0.75 | 0.67 | 100.0 | 5.0 | 5.0 |
sec | 2002_04 | dssp | 1k1v:A | 90.2 | 100 | 87 | 0 | 0 | 69 | 100 | 82.5 | 81 | 100 | 84 | 0.0 | 0.57 | 0.53 | 0.63 | 0.77 | 1.0 | 0.77 | 100.0 | 9.0 | 0.00 |
sec | 2002_04 | dssp | 1k2e:A | 67.8 | 54 | 100 | 63 | 81 | 84 | 51 | 68.9 | 70 | 73 | 62 | 0.0 | 0.37 | 0.35 | 0.39 | 0.67 | 0.58 | 0.41 | 100.0 | 13.0 | 8.0 |
sec | 2002_04 | dssp | 1k3b:A | 77.3 | 0 | 0 | 80 | 83 | 80 | 70 | 67.9 | 0 | 88 | 52 | 0.0 | 0.27 | 0.26 | 0.30 | 1.0 | 0.61 | 0.54 | 100.0 | 3.0 | 2.0 |
sec | 2002_04 | dssp | 1k3k:A | 77.4 | 83 | 80 | 0 | 0 | 67 | 74 | 79.3 | 78 | 100 | 80 | 1.3 | 0.22 | 0.23 | 0.21 | 0.51 | 1.0 | 0.54 | 100.0 | 2.0 | 1.0 |
sec | 2002_04 | dssp | 1k81:A | 72.2 | 0 | 0 | 63 | 80 | 82 | 66 | 58.6 | 100 | 73 | 47 | 0.0 | 0.16 | 0.16 | 0.16 | 1.0 | 0.46 | 0.46 | 100.0 | 0.00 | 11.0 |
sec | 2002_04 | dssp | 1k8b:A | 76.9 | 90 | 82 | 55 | 100 | 84 | 57 | 74.7 | 100 | 55 | 60 | 3.8 | 0.45 | 0.45 | 0.47 | 0.76 | 0.67 | 0.57 | 100.0 | 3.0 | 15.0 |
sec | 2002_04 | dssp | 1ksk:A | 76.9 | 82 | 79 | 81 | 67 | 71 | 82 | 84.3 | 85 | 82 | 85 | 1.2 | 0.39 | 0.40 | 0.39 | 0.75 | 0.63 | 0.56 | 100.0 | 0.00 | 5.0 |
sec | 2002_04 | dssp | 1ku3:A | 88.5 | 100 | 83 | 0 | 0 | 72 | 100 | 77.5 | 100 | 100 | 54 | 0.0 | 0.56 | 0.54 | 0.60 | 0.77 | 1.0 | 0.77 | 100.0 | 11.0 | 0.00 |
sec | 2002_04 | dssp | 1kxl:A | 67.9 | 69 | 71 | 80 | 50 | 63 | 77 | 48.8 | 67 | 73 | 39 | 1.0 | 0.27 | 0.28 | 0.26 | 0.60 | 0.52 | 0.39 | 100.0 | 0.00 | 11.0 |
sec | 2002_04 | dssp | 1ky9:B | 66.7 | 60 | 100 | 57 | 75 | 80 | 55 | 85.7 | 90 | 77 | 92 | 0.0 | 0.33 | 0.31 | 0.35 | 0.73 | 0.46 | 0.37 | 100.0 | 7.0 | 9.0 |
sec | 2002_04 | dssp | 1l0o:A | 71.6 | 55 | 90 | 88 | 62 | 77 | 68 | 63.2 | 49 | 83 | 67 | 6.3 | 0.33 | 0.33 | 0.33 | 0.59 | 0.64 | 0.54 | 0.0 | 14.0 | 9.0 |
sec | 2002_04 | dssp | 1l0o:C | 87.7 | 92 | 95 | 0 | 0 | 78 | 73 | 93.9 | 100 | 0 | 82 | 0.0 | 0.47 | 0.48 | 0.47 | 0.77 | -0.01 | 0.67 | 100.0 | 1.0 | 0.00 |
sec | 2002_04 | dssp | 1l3y:A | 85.4 | 0 | 0 | 75 | 100 | 100 | 82 | 90.2 | 0 | 100 | 100 | 0.0 | 0.56 | 0.39 | 0.74 | 1.0 | 0.84 | 0.64 | 100.0 | 9.0 | 4.0 |
sec | 2002_04 | dssp | 1l7j:A | 72.8 | 19 | 100 | 78 | 74 | 76 | 70 | 67.4 | 26 | 77 | 64 | 0.2 | 0.25 | 0.23 | 0.28 | 0.42 | 0.57 | 0.46 | 0.0 | 6.0 | 2.0 |
sec | 2002_04 | dssp | 1l8c:B | 64.7 | 42 | 53 | 0 | 0 | 78 | 69 | 41.1 | 42 | 100 | 40 | 0.0 | 0.03 | 0.03 | 0.04 | 0.21 | 1.0 | 0.21 | 100.0 | 7.0 | 0.00 |
sec | 2002_04 | dssp | 1l8m:A | 65.3 | 78 | 73 | 0 | 0 | 38 | 45 | 31.5 | 32 | 100 | 29 | 0.0 | 0.04 | 0.04 | 0.04 | 0.20 | 1.0 | 0.17 | 100.0 | 3.0 | 0.00 |
sec | 2002_04 | dssp | THIS_month:psum | 75.5 | 62 | 71 | 47 | 48 | 75 | 72 | 71.0 | 68.0 | 79.1 | 65.9 | 0.89 | 0.35 | 0.33 | 0.36 | 0.68 | 0.67 | 0.51 | 85.7 | 6.2 | 4.7 |
sec | 2002_04 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |