METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_05 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_05 | dssp | THIS_month:psum | 71.5 | 57 | 69 | 48 | 47 | 75 | 69 | 65.5 | 60.2 | 70.5 | 65.8 | 3.8 | 0.29 | 0.29 | 0.30 | 0.59 | 0.63 | 0.48 | 85.7 | 8.2 | 7.8 |
sec | 2002_05 | dssp | 1cix:A | 75.0 | 0 | 0 | 0 | 0 | 100 | 75 | 28.7 | 100 | 0 | 38 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 0.00 | 25.0 |
sec | 2002_05 | dssp | 1hxv:A | 71.8 | 11 | 100 | 83 | 65 | 75 | 77 | 70.1 | 11 | 86 | 70 | 3.5 | 0.23 | 0.20 | 0.26 | 0.31 | 0.55 | 0.50 | 0.0 | 9.0 | 10.0 |
sec | 2002_05 | dssp | 1i36:A | 80.0 | 82 | 93 | 77 | 77 | 77 | 61 | 83.8 | 86 | 82 | 79 | 0.0 | 0.45 | 0.47 | 0.45 | 0.73 | 0.73 | 0.54 | 100.0 | 7.0 | 0.00 |
sec | 2002_05 | dssp | 1iko:P | 70.9 | 0 | 0 | 86 | 58 | 75 | 80 | 65.1 | 0 | 81 | 67 | 3.5 | 0.21 | 0.18 | 0.24 | 1.0 | 0.55 | 0.48 | 100.0 | 9.0 | 14.0 |
sec | 2002_05 | dssp | 1ir6:A | 82.3 | 85 | 88 | 64 | 70 | 83 | 78 | 84.6 | 91 | 67 | 81 | 2.3 | 0.43 | 0.43 | 0.43 | 0.74 | 0.63 | 0.68 | 100.0 | 1.0 | 1.0 |
sec | 2002_05 | dssp | 1jjv:A | 82.8 | 84 | 88 | 88 | 72 | 78 | 81 | 92.5 | 93 | 93 | 91 | 1.7 | 0.48 | 0.49 | 0.47 | 0.75 | 0.76 | 0.67 | 100.0 | 1.0 | 3.0 |
sec | 2002_05 | dssp | 1jni:A | 56.5 | 0 | 0 | 50 | 9 | 75 | 82 | 60.5 | 0 | 37 | 81 | 14.5 | 0.08 | 0.08 | 0.09 | 1.0 | 0.07 | 0.34 | 100.0 | 22.0 | 29.0 |
sec | 2002_05 | dssp | 1jsx:A | 97.1 | 100 | 96 | 0 | 0 | 88 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 0.80 | 0.79 | 0.83 | 0.92 | 1.0 | 0.92 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1juh:B | 74.0 | 50 | 83 | 74 | 74 | 76 | 72 | 80.0 | 60 | 81 | 81 | 0.0 | 0.27 | 0.27 | 0.29 | 0.62 | 0.55 | 0.48 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1k3r:B | 79.2 | 76 | 82 | 81 | 74 | 79 | 79 | 76.4 | 82 | 90 | 68 | 0.7 | 0.42 | 0.42 | 0.42 | 0.72 | 0.71 | 0.59 | 100.0 | 1.0 | 2.0 |
sec | 2002_05 | dssp | 1k45:A | 79.2 | 0 | 0 | 87 | 75 | 77 | 83 | 69.7 | 0 | 84 | 62 | 1.7 | 0.29 | 0.27 | 0.32 | 1.0 | 0.62 | 0.62 | 100.0 | 3.0 | 7.0 |
sec | 2002_05 | dssp | 1kjy:B | 65.7 | 52 | 69 | 0 | 0 | 77 | 63 | 47.2 | 52 | 100 | 43 | 0.0 | 0.07 | 0.07 | 0.08 | 0.31 | 1.0 | 0.31 | 100.0 | 11.0 | 0.00 |
sec | 2002_05 | dssp | 1kpp:A | 69.4 | 76 | 87 | 43 | 48 | 76 | 69 | 65.6 | 89 | 37 | 64 | 0.0 | 0.32 | 0.32 | 0.34 | 0.76 | 0.32 | 0.38 | 100.0 | 3.0 | 2.0 |
sec | 2002_05 | dssp | 1kr7:A | 90.9 | 92 | 94 | 0 | 0 | 86 | 81 | 87.1 | 86 | 100 | 89 | 0.0 | 0.50 | 0.52 | 0.50 | 0.77 | 1.0 | 0.77 | 100.0 | 1.0 | 0.00 |
sec | 2002_05 | dssp | 1ksh:B | 68.2 | 62 | 66 | 63 | 85 | 80 | 52 | 74.7 | 87 | 72 | 72 | 5.4 | 0.23 | 0.24 | 0.23 | 0.58 | 0.48 | 0.46 | 100.0 | 0.00 | 14.0 |
sec | 2002_05 | dssp | 1ktg:A | 48.9 | 92 | 44 | 5 | 42 | 72 | 57 | 31.7 | 62 | 6 | 37 | 29.1 | 0.21 | 0.18 | 0.24 | 0.41 | -0.00 | 0.49 | 100.0 | 31.0 | 38.0 |
sec | 2002_05 | dssp | 1kuu:A | 73.3 | 58 | 70 | 69 | 83 | 84 | 67 | 71.5 | 56 | 73 | 79 | 3.9 | 0.31 | 0.31 | 0.33 | 0.56 | 0.62 | 0.55 | 100.0 | 3.0 | 6.0 |
sec | 2002_05 | dssp | 1kv4:A | 71.4 | 60 | 100 | 0 | 0 | 100 | 63 | 52.8 | 43 | 100 | 100 | 11.9 | 0.40 | 0.50 | 0.31 | 0.54 | 1.0 | 0.69 | 100.0 | 28.0 | 11.0 |
sec | 2002_05 | dssp | 1kyq:B | 70.7 | 78 | 68 | 52 | 89 | 70 | 68 | 66.9 | 73 | 50 | 66 | 5.1 | 0.27 | 0.26 | 0.28 | 0.50 | 0.63 | 0.49 | 100.0 | 6.0 | 7.0 |
sec | 2002_05 | dssp | 1l1d:B | 69.4 | 51 | 100 | 47 | 70 | 92 | 63 | 52.8 | 53 | 43 | 57 | 2.0 | 0.31 | 0.28 | 0.35 | 0.66 | 0.46 | 0.48 | 100.0 | 12.0 | 8.0 |
sec | 2002_05 | dssp | 1l1s:A | 73.9 | 67 | 97 | 81 | 66 | 78 | 59 | 79.3 | 80 | 85 | 71 | 4.5 | 0.38 | 0.39 | 0.38 | 0.69 | 0.64 | 0.52 | 100.0 | 14.0 | 5.0 |
sec | 2002_05 | dssp | 1ldj:A | 87.3 | 97 | 86 | 0 | 0 | 57 | 88 | 94.5 | 100 | 100 | 78 | 0.0 | 0.37 | 0.33 | 0.42 | 0.64 | 1.0 | 0.64 | 100.0 | 9.0 | 0.00 |
sec | 2002_05 | dssp | 1ldj:B | 69.3 | 63 | 87 | 65 | 41 | 71 | 83 | 60.1 | 63 | 49 | 63 | 3.4 | 0.25 | 0.26 | 0.25 | 0.71 | 0.33 | 0.44 | 100.0 | 3.0 | 12.0 |
sec | 2002_05 | dssp | 1ldv:A | 52.3 | 2 | 14 | 47 | 35 | 66 | 63 | 30.0 | 2 | 27 | 36 | 4.5 | 0.06 | 0.06 | 0.07 | 0.00 | 0.15 | 0.09 | 100.0 | 11.0 | 8.0 |
sec | 2002_05 | dssp | 1lgj:A | 62.5 | 71 | 70 | 0 | 0 | 47 | 48 | 47.7 | 55 | 100 | 34 | 0.0 | 0.02 | 0.03 | 0.03 | 0.18 | 1.0 | 0.18 | 100.0 | 0.00 | 0.00 |
sec | 2002_05 | dssp | 1lgo:A | 59.4 | 57 | 90 | 0 | 0 | 62 | 55 | 58.1 | 63 | 100 | 49 | 10.3 | 0.14 | 0.18 | 0.11 | 0.44 | 1.0 | 0.34 | 0.0 | 23.0 | 19.0 |
sec | 2002_05 | dssp | 1li1:A | 68.9 | 0 | 0 | 67 | 83 | 85 | 62 | 64.3 | 0 | 66 | 76 | 1.3 | 0.23 | 0.20 | 0.26 | -0.05 | 0.59 | 0.43 | 100.0 | 7.0 | 8.0 |
sec | 2002_05 | dssp | 1li5:A | 81.6 | 84 | 91 | 65 | 84 | 86 | 72 | 76.3 | 91 | 74 | 62 | 0.6 | 0.48 | 0.48 | 0.50 | 0.80 | 0.68 | 0.64 | 100.0 | 3.0 | 4.0 |
sec | 2002_05 | dssp | 1lja:A | 68.6 | 79 | 76 | 0 | 0 | 42 | 50 | 46.9 | 49 | 100 | 39 | 1.9 | 0.05 | 0.06 | 0.06 | 0.22 | 1.0 | 0.25 | 100.0 | 2.0 | 1.0 |
sec | 2002_05 | dssp | 1lk8:A | 50.7 | 55 | 42 | 31 | 31 | 54 | 67 | 47.4 | 58 | 33 | 46 | 12.4 | 0.04 | 0.05 | 0.05 | 0.19 | 0.16 | 0.27 | 100.0 | 10.0 | 0.00 |
sec | 2002_05 | dssp | 1ll3:A | 74.7 | 67 | 94 | 68 | 74 | 85 | 63 | 71.8 | 75 | 69 | 68 | 0.8 | 0.38 | 0.38 | 0.40 | 0.69 | 0.64 | 0.53 | 100.0 | 11.0 | 1.0 |
sec | 2002_05 | dssp | 1ln4:A | 93.9 | 95 | 100 | 100 | 83 | 89 | 94 | 98.5 | 100 | 100 | 96 | 0.0 | 0.81 | 0.82 | 0.80 | 0.95 | 0.88 | 0.87 | 0.0 | 2.0 | 4.0 |
sec | 2002_05 | dssp | 1lpl:A | 74.7 | 36 | 100 | 90 | 63 | 73 | 82 | 73.5 | 54 | 83 | 71 | 2.1 | 0.32 | 0.31 | 0.35 | 0.57 | 0.61 | 0.54 | 0.0 | 7.0 | 13.0 |
sec | 2002_05 | dssp | 1lr0:A | 62.7 | 45 | 94 | 73 | 94 | 90 | 40 | 45.3 | 32 | 95 | 68 | 0.0 | 0.37 | 0.36 | 0.38 | 0.47 | 0.80 | 0.38 | 100.0 | 28.0 | 3.0 |
sec | 2002_05 | dssp | 1lu7:A | 47.1 | 75 | 62 | 33 | 11 | 26 | 60 | 37.9 | 62 | 6 | 24 | 8.4 | 0.10 | 0.11 | 0.10 | 0.42 | 0.03 | 0.11 | 0.0 | 8.0 | 19.0 |
sec | 2002_05 | dssp | THIS_month:psum | 71.5 | 57 | 69 | 48 | 47 | 75 | 69 | 65.5 | 60.2 | 70.5 | 65.8 | 3.8 | 0.29 | 0.29 | 0.30 | 0.59 | 0.63 | 0.48 | 85.7 | 8.2 | 7.8 |
sec | 2002_05 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |