METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2002_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_09 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_09 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2002_09 | dssp | THIS_month:psum | 75.0 | 66 | 84 | 57 | 55 | 82 | 70 | 71.8 | 72.4 | 67.3 | 71.4 | 1.8 | 0.36 | 0.35 | 0.36 | 0.64 | 0.56 | 0.52 | 90 | 6.6 | 4.6 |
sec | 2002_09 | dssp | 1gxu:A | 76.1 | 80 | 100 | 75 | 77 | 74 | 63 | 86.2 | 100 | 85 | 77 | 0.0 | 0.47 | 0.47 | 0.48 | 0.87 | 0.59 | 0.49 | 100.0 | 4.0 | 1.0 |
sec | 2002_09 | dssp | 1gzs:B | 67.9 | 62 | 98 | 0 | 0 | 97 | 42 | 51.5 | 50 | 0 | 67 | 0.6 | 0.26 | 0.27 | 0.27 | 0.54 | -0.01 | 0.48 | 0.0 | 26.0 | 4.0 |
sec | 2002_09 | dssp | 1h0x:A | 75.3 | 62 | 100 | 75 | 90 | 88 | 53 | 75.5 | 77 | 72 | 79 | 0.0 | 0.47 | 0.47 | 0.49 | 0.73 | 0.72 | 0.52 | 100.0 | 11.0 | 6.0 |
sec | 2002_09 | dssp | 1iya:A | 73.8 | 75 | 86 | 38 | 44 | 83 | 76 | 73.2 | 88 | 33 | 78 | 0.5 | 0.32 | 0.31 | 0.33 | 0.75 | 0.30 | 0.45 | 100.0 | 3.0 | 2.0 |
sec | 2002_09 | dssp | 1klx:A | 92.5 | 91 | 97 | 0 | 0 | 94 | 82 | 98.7 | 100 | 100 | 95 | 0.0 | 0.60 | 0.62 | 0.58 | 0.83 | 1.0 | 0.83 | 100.0 | 4.0 | 0.00 |
sec | 2002_09 | dssp | 1ko6:A | 72.4 | 53 | 89 | 82 | 66 | 74 | 72 | 74.2 | 56 | 77 | 80 | 1.3 | 0.32 | 0.32 | 0.34 | 0.63 | 0.61 | 0.47 | 100.0 | 8.0 | 7.0 |
sec | 2002_09 | dssp | 1koy:A | 71.0 | 70 | 82 | 0 | 0 | 71 | 55 | 72.0 | 92 | 100 | 45 | 0.0 | 0.12 | 0.13 | 0.12 | 0.40 | 1.0 | 0.40 | 100.0 | 9.0 | 0.00 |
sec | 2002_09 | dssp | 1kwg:A | 74.1 | 72 | 82 | 62 | 67 | 80 | 71 | 70.6 | 80 | 68 | 64 | 2.0 | 0.31 | 0.31 | 0.32 | 0.66 | 0.57 | 0.52 | 100.0 | 4.0 | 1.0 |
sec | 2002_09 | dssp | 1l2m:A | 63.6 | 58 | 83 | 55 | 55 | 71 | 65 | 57.6 | 58 | 49 | 67 | 5.0 | 0.20 | 0.20 | 0.21 | 0.66 | 0.28 | 0.37 | 100.0 | 4.0 | 0.00 |
sec | 2002_09 | dssp | 1l8q:A | 86.3 | 89 | 90 | 70 | 70 | 83 | 81 | 82.5 | 85 | 79 | 77 | 2.4 | 0.47 | 0.47 | 0.47 | 0.75 | 0.68 | 0.74 | 100.0 | 0.00 | 0.00 |
sec | 2002_09 | dssp | 1lnw:C | 91.8 | 87 | 100 | 100 | 100 | 100 | 79 | 100.0 | 100 | 100 | 100 | 0.0 | 0.71 | 0.73 | 0.69 | 0.84 | 1.0 | 0.83 | 100.0 | 8.0 | 0.00 |
sec | 2002_09 | dssp | 1lqp:A | 82.1 | 72 | 96 | 74 | 97 | 96 | 68 | 88.3 | 87 | 88 | 88 | 0.0 | 0.55 | 0.54 | 0.57 | 0.79 | 0.78 | 0.67 | 100.0 | 5.0 | 8.0 |
sec | 2002_09 | dssp | 1lrz:A | 69.7 | 69 | 77 | 58 | 56 | 77 | 73 | 66.9 | 65 | 61 | 72 | 10.5 | 0.26 | 0.27 | 0.27 | 0.61 | 0.40 | 0.59 | 0.0 | 3.0 | 0.00 |
sec | 2002_09 | dssp | 1lv3:A | 78.5 | 0 | 0 | 83 | 38 | 90 | 90 | 64.5 | 0 | 70 | 70 | 6.1 | 0.25 | 0.24 | 0.28 | -0.04 | 0.50 | 0.54 | 100.0 | 10.0 | 10.0 |
sec | 2002_09 | dssp | 1lv9:A | 76.6 | 88 | 80 | 77 | 63 | 72 | 84 | 73.1 | 100 | 95 | 61 | 0.0 | 0.39 | 0.41 | 0.39 | 0.81 | 0.57 | 0.53 | 100.0 | 1.0 | 6.0 |
sec | 2002_09 | dssp | 1m2o:A | 67.4 | 35 | 85 | 60 | 52 | 79 | 70 | 53.3 | 35 | 43 | 60 | 0.0 | 0.22 | 0.20 | 0.24 | 0.49 | 0.43 | 0.29 | 100.0 | 10.0 | 3.0 |
sec | 2002_09 | dssp | 1m2v:B | 65.8 | 13 | 100 | 40 | 30 | 87 | 72 | 43.6 | 20 | 21 | 55 | 4.1 | 0.10 | 0.08 | 0.12 | 0.33 | 0.23 | 0.27 | 100.0 | 17.0 | 4.0 |
sec | 2002_09 | dssp | 1mgp:A | 77.2 | 81 | 94 | 83 | 71 | 67 | 65 | 75.8 | 89 | 78 | 58 | 0.0 | 0.47 | 0.48 | 0.47 | 0.80 | 0.67 | 0.49 | 100.0 | 5.0 | 4.0 |
sec | 2002_09 | dssp | 1miu:A | 69.9 | 76 | 74 | 80 | 45 | 63 | 84 | 61.4 | 66 | 73 | 56 | 3.2 | 0.29 | 0.31 | 0.28 | 0.65 | 0.49 | 0.49 | 100.0 | 0.00 | 12.0 |
sec | 2002_09 | dssp | 1mm5:A | 69.4 | 88 | 75 | 46 | 95 | 94 | 58 | 68.1 | 100 | 54 | 79 | 1.7 | 0.36 | 0.35 | 0.37 | 0.79 | 0.51 | 0.51 | 100.0 | 1.0 | 25.0 |
sec | 2002_09 | dssp | THIS_month:psum | 75.0 | 66 | 84 | 57 | 55 | 82 | 70 | 71.8 | 72.4 | 67.3 | 71.4 | 1.8 | 0.36 | 0.35 | 0.36 | 0.64 | 0.56 | 0.52 | 90 | 6.6 | 4.6 |
sec | 2002_09 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2002_09 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |