METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2000_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2000_09 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2000_09 | dssp | THIS_month:psum | 75.9 | 66 | 73 | 54 | 53 | 75 | 69 | 68.2 | 67.5 | 70.8 | 66.6 | 1.5 | 0.33 | 0.33 | 0.33 | 0.71 | 0.67 | 0.51 | 76.9 | 5.5 | 6.9 |
sec | 2000_09 | dssp | 1d1h:A | 62.9 | 0 | 0 | 50 | 40 | 75 | 72 | 41.8 | 0 | 32 | 50 | 0.0 | 0.07 | 0.07 | 0.09 | 1.0 | 0.25 | 0.11 | 100.0 | 8.0 | 5.0 |
sec | 2000_09 | dssp | 1d1n:A | 63.3 | 0 | 0 | 86 | 51 | 48 | 85 | 64.1 | 100 | 65 | 63 | 0.0 | 0.10 | 0.10 | 0.11 | 1.0 | 0.36 | 0.36 | 0.0 | 0.00 | 26.0 |
sec | 2000_09 | dssp | 1d2o:A | 71.7 | 0 | 0 | 71 | 84 | 77 | 57 | 68.6 | 0 | 69 | 72 | 0.0 | 0.19 | 0.18 | 0.20 | 1.0 | 0.50 | 0.44 | 100.0 | 3.0 | 9.0 |
sec | 2000_09 | dssp | 1d3g:A | 79.7 | 83 | 92 | 33 | 60 | 90 | 72 | 66.0 | 75 | 26 | 68 | 1.4 | 0.43 | 0.41 | 0.46 | 0.79 | 0.38 | 0.63 | 100.0 | 4.0 | 5.0 |
sec | 2000_09 | dssp | 1dlw:A | 87.9 | 89 | 93 | 0 | 0 | 84 | 82 | 87.0 | 83 | 100 | 94 | 0.8 | 0.45 | 0.48 | 0.43 | 0.75 | 1.0 | 0.75 | 100.0 | 2.0 | 1.0 |
sec | 2000_09 | dssp | 1dqc:A | 75.3 | 0 | 0 | 33 | 87 | 97 | 73 | 51.5 | 0 | 33 | 61 | 0.0 | 0.20 | 0.13 | 0.28 | 1.0 | 0.45 | 0.40 | 100.0 | 4.0 | 17.0 |
sec | 2000_09 | dssp | 1ekr:A | 76.9 | 66 | 94 | 88 | 69 | 77 | 72 | 77.5 | 78 | 97 | 62 | 5.5 | 0.40 | 0.40 | 0.41 | 0.71 | 0.67 | 0.61 | 0.0 | 10.0 | 8.0 |
sec | 2000_09 | dssp | 1eo6:A | 78.4 | 82 | 91 | 53 | 77 | 88 | 71 | 76.5 | 85 | 63 | 76 | 0.8 | 0.43 | 0.42 | 0.46 | 0.80 | 0.56 | 0.60 | 0.0 | 3.0 | 6.0 |
sec | 2000_09 | dssp | 1esm:A | 76.2 | 74 | 81 | 72 | 84 | 79 | 68 | 67.7 | 60 | 77 | 73 | 1.6 | 0.37 | 0.37 | 0.38 | 0.62 | 0.74 | 0.55 | 100.0 | 3.0 | 2.0 |
sec | 2000_09 | dssp | 1euj:A | 68.9 | 41 | 87 | 73 | 66 | 71 | 69 | 69.0 | 47 | 69 | 72 | 1.8 | 0.21 | 0.20 | 0.22 | 0.57 | 0.46 | 0.41 | 100.0 | 5.0 | 4.0 |
sec | 2000_09 | dssp | 1evs:A | 76.9 | 77 | 87 | 0 | 0 | 75 | 59 | 76.0 | 73 | 100 | 83 | 0.0 | 0.19 | 0.21 | 0.19 | 0.50 | 1.0 | 0.50 | 100.0 | 8.0 | 0.00 |
sec | 2000_09 | dssp | 1eyq:A | 78.3 | 81 | 90 | 75 | 84 | 76 | 62 | 79.5 | 93 | 67 | 76 | 0.4 | 0.46 | 0.46 | 0.46 | 0.77 | 0.71 | 0.53 | 100.0 | 3.0 | 3.0 |
sec | 2000_09 | dssp | 1ezj:A | 76.3 | 79 | 94 | 0 | 0 | 63 | 46 | 64.3 | 65 | 100 | 56 | 2.6 | 0.21 | 0.26 | 0.16 | 0.51 | 1.0 | 0.41 | 0.0 | 13.0 | 6.0 |
sec | 2000_09 | dssp | 1ezw:A | 83.6 | 84 | 94 | 68 | 79 | 88 | 74 | 76.4 | 86 | 70 | 67 | 0.2 | 0.50 | 0.50 | 0.51 | 0.81 | 0.69 | 0.67 | 100.0 | 4.0 | 2.0 |
sec | 2000_09 | dssp | 1f3v:A | 59.5 | 78 | 61 | 25 | 64 | 57 | 53 | 67.2 | 87 | 33 | 62 | 12.0 | 0.11 | 0.11 | 0.13 | 0.37 | 0.30 | 0.34 | 0.0 | 12.0 | 13.0 |
sec | 2000_09 | dssp | 1f48:A | 77.4 | 76 | 82 | 78 | 91 | 78 | 68 | 77.8 | 80 | 90 | 70 | 0.3 | 0.41 | 0.41 | 0.41 | 0.62 | 0.82 | 0.54 | 100.0 | 3.0 | 2.0 |
sec | 2000_09 | dssp | 1f5x:A | 78.8 | 88 | 81 | 0 | 0 | 56 | 69 | 64.5 | 71 | 100 | 49 | 0.0 | 0.19 | 0.18 | 0.20 | 0.48 | 1.0 | 0.48 | 100.0 | 5.0 | 0.00 |
sec | 2000_09 | dssp | 1f6y:A | 91.5 | 91 | 100 | 80 | 100 | 100 | 77 | 91.5 | 100 | 90 | 78 | 0.0 | 0.75 | 0.75 | 0.76 | 0.91 | 0.87 | 0.82 | 100.0 | 4.0 | 4.0 |
sec | 2000_09 | dssp | 1few:A | 85.5 | 85 | 99 | 0 | 0 | 91 | 35 | 36.8 | 35 | 100 | 81 | 2.3 | 0.28 | 0.40 | 0.17 | 0.48 | 1.0 | 0.52 | 100.0 | 13.0 | 2.0 |
sec | 2000_09 | dssp | 1fjf:B | 78.6 | 80 | 82 | 79 | 70 | 76 | 77 | 73.1 | 86 | 76 | 61 | 1.2 | 0.38 | 0.39 | 0.38 | 0.65 | 0.71 | 0.59 | 100.0 | 0.00 | 1.0 |
sec | 2000_09 | dssp | 1fjf:C | 62.1 | 73 | 85 | 80 | 36 | 47 | 71 | 57.6 | 77 | 58 | 45 | 3.3 | 0.28 | 0.29 | 0.27 | 0.69 | 0.39 | 0.31 | 100.0 | 4.0 | 20.0 |
sec | 2000_09 | dssp | 1fjf:I | 75.6 | 77 | 83 | 80 | 58 | 72 | 78 | 61.7 | 61 | 74 | 59 | 0.0 | 0.39 | 0.40 | 0.39 | 0.72 | 0.61 | 0.51 | 100.0 | 2.0 | 6.0 |
sec | 2000_09 | dssp | 1fjf:J | 70.4 | 100 | 54 | 88 | 59 | 56 | 91 | 65.5 | 80 | 66 | 62 | 0.0 | 0.38 | 0.42 | 0.36 | 0.68 | 0.60 | 0.49 | 100.0 | 11.0 | 12.0 |
sec | 2000_09 | dssp | 1fjf:K | 81.5 | 73 | 95 | 96 | 68 | 77 | 86 | 82.3 | 90 | 100 | 71 | 1.6 | 0.51 | 0.51 | 0.52 | 0.79 | 0.73 | 0.66 | 100.0 | 5.0 | 10.0 |
sec | 2000_09 | dssp | 1fjf:N | 78.3 | 72 | 80 | 0 | 0 | 91 | 77 | 47.0 | 57 | 0 | 45 | 1.6 | 0.29 | 0.25 | 0.34 | 0.63 | 1.0 | 0.59 | 100.0 | 3.0 | 6.0 |
sec | 2000_09 | dssp | 1flo:A | 78.7 | 79 | 98 | 100 | 53 | 68 | 68 | 84.7 | 88 | 86 | 76 | 2.7 | 0.48 | 0.51 | 0.46 | 0.76 | 0.68 | 0.55 | 0.0 | 11.0 | 11.0 |
sec | 2000_09 | dssp | THIS_month:psum | 75.9 | 66 | 73 | 54 | 53 | 75 | 69 | 68.2 | 67.5 | 70.8 | 66.6 | 1.5 | 0.33 | 0.33 | 0.33 | 0.71 | 0.67 | 0.51 | 76.9 | 5.5 | 6.9 |
sec | 2000_09 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2000_09 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2000_09 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |