METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
METHOD url: | PROF_king |
TYPE : | sec |
NPROT : | 1276 |
NWEEKS : | 97 |
NOTE 1 : | here ALL results obtained for PROF_king in month 2001_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_09 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
sec | 2001_09 | dssp | THIS_month:psum | 75.3 | 61 | 71 | 61 | 66 | 77 | 69 | 71.6 | 63.7 | 69.4 | 67.1 | 1.4 | 0.36 | 0.35 | 0.36 | 0.67 | 0.59 | 0.52 | 75 | 4.9 | 6.3 |
sec | 2001_09 | dssp | 1dfc:B | 74.1 | 0 | 0 | 85 | 71 | 70 | 81 | 77.7 | 0 | 84 | 78 | 2.9 | 0.24 | 0.24 | 0.25 | -0.03 | 0.58 | 0.54 | 0.0 | 1.0 | 8.0 |
sec | 2001_09 | dssp | 1e1a:A | 74.0 | 0 | 0 | 73 | 75 | 76 | 72 | 74.4 | 0 | 79 | 70 | 0.9 | 0.18 | 0.18 | 0.19 | 1.0 | 0.48 | 0.50 | 100.0 | 0.00 | 1.0 |
sec | 2001_09 | dssp | 1e8c:A | 82.6 | 80 | 91 | 87 | 78 | 81 | 78 | 81.8 | 76 | 87 | 83 | 0.4 | 0.51 | 0.51 | 0.51 | 0.79 | 0.77 | 0.65 | 0.0 | 4.0 | 2.0 |
sec | 2001_09 | dssp | 1e8p:A | 54.3 | 57 | 66 | 22 | 66 | 80 | 50 | 31.5 | 57 | 23 | 29 | 0.0 | 0.18 | 0.16 | 0.21 | 0.55 | 0.21 | 0.14 | 100.0 | 2.0 | 26.0 |
sec | 2001_09 | dssp | 1e8q:A | 52.2 | 50 | 50 | 22 | 66 | 77 | 50 | 27.1 | 33 | 23 | 28 | 0.0 | 0.14 | 0.13 | 0.17 | 0.42 | 0.21 | 0.07 | 100.0 | 0.00 | 26.0 |
sec | 2001_09 | dssp | 1f45:B | 81.0 | 85 | 96 | 0 | 0 | 76 | 66 | 88.1 | 92 | 0 | 84 | 0.0 | 0.43 | 0.46 | 0.41 | 0.75 | -0.03 | 0.57 | 100.0 | 7.0 | 2.0 |
sec | 2001_09 | dssp | 1fex:A | 71.2 | 61 | 86 | 0 | 0 | 82 | 76 | 74.0 | 67 | 100 | 79 | 8.4 | 0.24 | 0.28 | 0.20 | 0.52 | 1.0 | 0.59 | 100.0 | 15.0 | 11.0 |
sec | 2001_09 | dssp | 1fsi:B | 79.4 | 91 | 88 | 71 | 90 | 75 | 61 | 74.9 | 100 | 67 | 61 | 0.0 | 0.51 | 0.52 | 0.52 | 0.84 | 0.70 | 0.53 | 100.0 | 0.00 | 7.0 |
sec | 2001_09 | dssp | 1fsi:C | 79.8 | 91 | 88 | 71 | 90 | 76 | 62 | 75.3 | 100 | 67 | 62 | 0.0 | 0.52 | 0.52 | 0.52 | 0.85 | 0.71 | 0.54 | 100.0 | 0.00 | 7.0 |
sec | 2001_09 | dssp | 1gd5:A | 87.7 | 83 | 92 | 92 | 82 | 88 | 87 | 78.5 | 88 | 87 | 71 | 0.7 | 0.59 | 0.59 | 0.59 | 0.82 | 0.83 | 0.76 | 100.0 | 3.0 | 2.0 |
sec | 2001_09 | dssp | 1gd7:A | 67.0 | 0 | 0 | 80 | 72 | 73 | 62 | 63.6 | 0 | 83 | 63 | 0.9 | 0.23 | 0.19 | 0.27 | 1.0 | 0.57 | 0.36 | 0.0 | 12.0 | 4.0 |
sec | 2001_09 | dssp | 1gd8:A | 78.1 | 90 | 87 | 38 | 88 | 83 | 58 | 82.1 | 92 | 56 | 77 | 4.7 | 0.38 | 0.37 | 0.41 | 0.72 | 0.52 | 0.59 | 100.0 | 1.0 | 11.0 |
sec | 2001_09 | dssp | 1h6k:A | 80.5 | 80 | 91 | 0 | 0 | 84 | 69 | 78.6 | 84 | 0 | 71 | 1.7 | 0.31 | 0.33 | 0.30 | 0.64 | -0.01 | 0.62 | 100.0 | 7.0 | 0.00 |
sec | 2001_09 | dssp | 1hfo:A | 69.9 | 54 | 92 | 74 | 81 | 85 | 52 | 64.7 | 65 | 81 | 48 | 2.6 | 0.34 | 0.34 | 0.35 | 0.59 | 0.68 | 0.48 | 0.0 | 15.0 | 2.0 |
sec | 2001_09 | dssp | 1hno:A | 75.3 | 71 | 75 | 80 | 84 | 75 | 70 | 66.2 | 76 | 85 | 51 | 0.0 | 0.40 | 0.40 | 0.41 | 0.62 | 0.75 | 0.50 | 100.0 | 1.0 | 1.0 |
sec | 2001_09 | dssp | 1ho8:A | 83.0 | 81 | 90 | 0 | 0 | 85 | 73 | 67.9 | 67 | 100 | 69 | 0.0 | 0.34 | 0.35 | 0.34 | 0.65 | 1.0 | 0.65 | 100.0 | 5.0 | 0.00 |
sec | 2001_09 | dssp | 1hrk:A | 86.1 | 84 | 94 | 80 | 93 | 90 | 75 | 79.3 | 75 | 92 | 80 | 0.0 | 0.57 | 0.57 | 0.58 | 0.79 | 0.84 | 0.71 | 100.0 | 5.0 | 1.0 |
sec | 2001_09 | dssp | 1hze:A | 78.4 | 30 | 100 | 95 | 76 | 76 | 78 | 78.8 | 46 | 85 | 80 | 2.0 | 0.41 | 0.38 | 0.45 | 0.52 | 0.72 | 0.60 | 0.0 | 9.0 | 10.0 |
sec | 2001_09 | dssp | 1i18:A | 80.4 | 44 | 100 | 90 | 76 | 77 | 82 | 83.9 | 66 | 83 | 88 | 2.0 | 0.39 | 0.37 | 0.42 | 0.64 | 0.68 | 0.64 | 0.0 | 5.0 | 8.0 |
sec | 2001_09 | dssp | 1i8a:A | 75.7 | 0 | 0 | 87 | 78 | 75 | 72 | 70.1 | 0 | 90 | 63 | 0.0 | 0.33 | 0.29 | 0.38 | 1.0 | 0.66 | 0.51 | 0.0 | 7.0 | 5.0 |
sec | 2001_09 | dssp | 1i9g:A | 77.7 | 79 | 95 | 79 | 67 | 75 | 76 | 77.8 | 81 | 80 | 73 | 1.8 | 0.43 | 0.43 | 0.43 | 0.82 | 0.60 | 0.58 | 100.0 | 4.0 | 5.0 |
sec | 2001_09 | dssp | 1iqp:A | 82.5 | 83 | 90 | 75 | 96 | 82 | 65 | 81.8 | 90 | 84 | 65 | 0.6 | 0.45 | 0.45 | 0.45 | 0.68 | 0.83 | 0.61 | 100.0 | 4.0 | 2.0 |
sec | 2001_09 | dssp | 1j75:A | 70.2 | 78 | 100 | 9 | 50 | 100 | 44 | 71.3 | 100 | 12 | 48 | 1.7 | 0.46 | 0.42 | 0.50 | 0.78 | 0.14 | 0.53 | 100.0 | 12.0 | 15.0 |
sec | 2001_09 | dssp | 1j7v:R | 75.6 | 27 | 75 | 88 | 68 | 69 | 86 | 74.6 | 36 | 76 | 76 | 3.9 | 0.29 | 0.27 | 0.31 | 0.43 | 0.54 | 0.60 | 0.0 | 3.0 | 13.0 |
sec | 2001_09 | dssp | 1j8r:A | 65.8 | 50 | 15 | 61 | 82 | 72 | 58 | 65.7 | 60 | 65 | 66 | 2.0 | 0.14 | 0.15 | 0.13 | 0.25 | 0.43 | 0.36 | 0.0 | 4.0 | 14.0 |
sec | 2001_09 | dssp | 1j9y:A | 72.8 | 74 | 82 | 60 | 48 | 75 | 75 | 65.3 | 85 | 56 | 56 | 2.4 | 0.29 | 0.30 | 0.29 | 0.66 | 0.45 | 0.50 | 100.0 | 3.0 | 3.0 |
sec | 2001_09 | dssp | 1jce:A | 73.6 | 74 | 86 | 71 | 82 | 74 | 57 | 73.1 | 73 | 75 | 70 | 1.2 | 0.37 | 0.37 | 0.37 | 0.69 | 0.67 | 0.46 | 100.0 | 5.0 | 3.0 |
sec | 2001_09 | dssp | 1jcg:A | 73.7 | 74 | 81 | 75 | 85 | 71 | 59 | 74.7 | 74 | 82 | 68 | 0.8 | 0.37 | 0.38 | 0.38 | 0.64 | 0.72 | 0.45 | 100.0 | 3.0 | 3.0 |
sec | 2001_09 | dssp | 1jma:A | 72.2 | 42 | 75 | 64 | 78 | 85 | 69 | 61.9 | 47 | 75 | 58 | 0.0 | 0.29 | 0.27 | 0.32 | 0.50 | 0.60 | 0.44 | 100.0 | 6.0 | 5.0 |
sec | 2001_09 | dssp | 1jmt:A | 73.2 | 72 | 100 | 66 | 83 | 83 | 43 | 61.8 | 53 | 80 | 79 | 0.0 | 0.47 | 0.48 | 0.46 | 0.74 | 0.66 | 0.44 | 100.0 | 14.0 | 5.0 |
sec | 2001_09 | dssp | 1jnx:X | 67.6 | 68 | 76 | 72 | 50 | 65 | 71 | 69.9 | 73 | 71 | 67 | 3.3 | 0.24 | 0.25 | 0.24 | 0.58 | 0.50 | 0.41 | 100.0 | 3.0 | 7.0 |
sec | 2001_09 | dssp | 1jr3:A | 87.2 | 95 | 86 | 82 | 88 | 76 | 87 | 83.7 | 88 | 90 | 76 | 0.0 | 0.55 | 0.54 | 0.56 | 0.78 | 0.84 | 0.72 | 100.0 | 5.0 | 0.00 |
sec | 2001_09 | dssp | 1jr3:D | 73.7 | 89 | 75 | 31 | 63 | 62 | 72 | 73.9 | 83 | 40 | 68 | 5.0 | 0.24 | 0.23 | 0.27 | 0.56 | 0.40 | 0.51 | 100.0 | 10.0 | 5.0 |
sec | 2001_09 | dssp | 1jx3:A | 74.5 | 82 | 77 | 68 | 58 | 71 | 79 | 60.2 | 83 | 74 | 50 | 0.4 | 0.35 | 0.36 | 0.35 | 0.71 | 0.54 | 0.50 | 100.0 | 2.0 | 2.0 |
sec | 2001_09 | dssp | 1jx5:A | 80.1 | 0 | 0 | 84 | 64 | 78 | 91 | 81.1 | 0 | 81 | 81 | 0.6 | 0.28 | 0.29 | 0.28 | 1.0 | 0.58 | 0.60 | 100.0 | 0.00 | 9.0 |
sec | 2001_09 | dssp | 1jzt:A | 82.7 | 80 | 87 | 86 | 76 | 82 | 81 | 84.4 | 84 | 87 | 83 | 0.0 | 0.49 | 0.50 | 0.49 | 0.75 | 0.78 | 0.65 | 100.0 | 2.0 | 2.0 |
sec | 2001_09 | dssp | THIS_month:psum | 75.3 | 61 | 71 | 61 | 66 | 77 | 69 | 71.6 | 63.7 | 69.4 | 67.1 | 1.4 | 0.36 | 0.35 | 0.36 | 0.67 | 0.59 | 0.52 | 75 | 4.9 | 6.3 |
sec | 2001_09 | dssp | ALL_proteins:psum | 74.5 | 73 | 87 | 71 | 67 | 78 | 70 | 70.5 | 64.3 | 72.3 | 69.2 | 2.5 | 0.34 | 0.34 | 0.34 | 0.69 | 0.60 | 0.54 | 7758.6 | 7.4 | 5.7 |
sec | 2001_09 | dssp | ALL_proteins:sig | 9.3 | 33 | 35 | 34 | 32 | 11 | 12 | 13.7 | 29.6 | 25.4 | 13.9 | 4.0 | 0.13 | 0.13 | 0.13 | 0.23 | 0.23 | 0.15 | 7684.1 | 7.2 | 7.2 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.26 | 0.94 | 0.99 | 0.95 | 0.91 | 0.32 | 0.33 | 0.38 | 0.83 | 0.71 | 0.38 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 215.1 | 0.20 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |