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EVA sec results for: APSSP

Organisation of method specific results

AVERAGES : averages over all weeks
EACH MONTH : average over one month note: detail lists all proteins of that month
FTP RDB-table : flat file with all results note: may be VERY large!!

METHOD about:	../../doc/explain_methods.html#PX_about_apssp
METHOD url:	APSSP
METHOD quote:
TYPE :	sec
NPROT :	1312
NWEEKS :	70
AVE_Q3 :	76.5
AVE_SOV:	71.7
NOTE 1 :	here ALL results obtained for apssp are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE
sec	2002_10_07	dssp	psum	76.4	78	83	66	77	83	73	71.7	71.3	69.3	72.1	3.2	0.40	0.40	0.40	0.70	0.65	0.61	7957.3	6.7	5.9
sec	2002_10_07	dssp	sig	13.3	31	33	34	37	13	14	17.4	27.5	27.7	17.1	4.7	0.23	0.23	0.23	0.26	0.27	0.21	7880.8	8.3	7.6
sec	2002_10_07	dssp	errsig	0.36	0.87	0.91	0.95	1	0.37	0.40	0.48	0.76	0.76	0.47	0.13	0.00	0.00	0.00	0.00	0.00	0.00	217.5	0.23	0.21

Averages over each month

Type	Method	Month	Nprot	Average Q3 for month	File with details for month
sec	apssp	ALL	1312	76.5
sec	apssp	2001_04	4	59.3	old/2001_04_apssp.html
sec	apssp	2001_05	12	65.4	old/2001_05_apssp.html
sec	apssp	2001_06	11	60.8	old/2001_06_apssp.html
sec	apssp	2001_07	25	70.0	old/2001_07_apssp.html
sec	apssp	2001_08	40	68.3	old/2001_08_apssp.html
sec	apssp	2001_09	35	67.9	old/2001_09_apssp.html
sec	apssp	2001_10	7	66.0	old/2001_10_apssp.html
sec	apssp	2001_11	14	67.2	old/2001_11_apssp.html
sec	apssp	2001_12	140	78.6	old/2001_12_apssp.html
sec	apssp	2002_01	36	76.5	old/2002_01_apssp.html
sec	apssp	2002_02	30	67.1	old/2002_02_apssp.html
sec	apssp	2002_03	27	71.0	old/2002_03_apssp.html
sec	apssp	2002_04	23	70.3	old/2002_04_apssp.html
sec	apssp	2002_05	38	67.0	old/2002_05_apssp.html
sec	apssp	2002_06	24	65.2	old/2002_06_apssp.html
sec	apssp	2002_07	31	71.1	old/2002_07_apssp.html
sec	apssp	2002_08	14	70.9	old/2002_08_apssp.html
sec	apssp	2002_09	20	66.2	old/2002_09_apssp.html
sec	apssp	ALL	1312	76.5

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: Oct 7, 2002
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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