METHOD about: | ../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
METHOD quote: | |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
AVE_Q3 : | 76.5 |
AVE_SOV: | 71.7 |
NOTE 1 : | here ALL results obtained for apssp are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_10_07 | dssp | psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_10_07 | dssp | sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_10_07 | dssp | errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
---|---|---|---|---|---|
sec | apssp | ALL | 1312 | 76.5 | |
sec | apssp | 2001_04 | 4 | 59.3 | old/2001_04_apssp.html |
sec | apssp | 2001_05 | 12 | 65.4 | old/2001_05_apssp.html |
sec | apssp | 2001_06 | 11 | 60.8 | old/2001_06_apssp.html |
sec | apssp | 2001_07 | 25 | 70.0 | old/2001_07_apssp.html |
sec | apssp | 2001_08 | 40 | 68.3 | old/2001_08_apssp.html |
sec | apssp | 2001_09 | 35 | 67.9 | old/2001_09_apssp.html |
sec | apssp | 2001_10 | 7 | 66.0 | old/2001_10_apssp.html |
sec | apssp | 2001_11 | 14 | 67.2 | old/2001_11_apssp.html |
sec | apssp | 2001_12 | 140 | 78.6 | old/2001_12_apssp.html |
sec | apssp | 2002_01 | 36 | 76.5 | old/2002_01_apssp.html |
sec | apssp | 2002_02 | 30 | 67.1 | old/2002_02_apssp.html |
sec | apssp | 2002_03 | 27 | 71.0 | old/2002_03_apssp.html |
sec | apssp | 2002_04 | 23 | 70.3 | old/2002_04_apssp.html |
sec | apssp | 2002_05 | 38 | 67.0 | old/2002_05_apssp.html |
sec | apssp | 2002_06 | 24 | 65.2 | old/2002_06_apssp.html |
sec | apssp | 2002_07 | 31 | 71.1 | old/2002_07_apssp.html |
sec | apssp | 2002_08 | 14 | 70.9 | old/2002_08_apssp.html |
sec | apssp | 2002_09 | 20 | 66.2 | old/2002_09_apssp.html |
sec | apssp | ALL | 1312 | 76.5 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |