METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2002_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_01 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_01 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2002_01 | dssp | THIS_month:psum | 76.4 | 62 | 73 | 44 | 54 | 85 | 68 | 70.3 | 75.6 | 71.8 | 72.8 | 2.4 | 0.38 | 0.39 | 0.37 | 0.67 | 0.69 | 0.56 | 85.7 | 10 | 4.8 |
sec | 2002_01 | dssp | 1ear:A | 77.5 | 80 | 67 | 65 | 87 | 87 | 76 | 80.0 | 90 | 74 | 79 | 7.0 | 0.41 | 0.41 | 0.41 | 0.65 | 0.64 | 0.68 | 100.0 | 4.0 | 9.0 |
sec | 2002_01 | dssp | 1ez4:A | 67.1 | 52 | 94 | 75 | 80 | 82 | 48 | 66.4 | 62 | 77 | 64 | 0.0 | 0.37 | 0.37 | 0.38 | 0.57 | 0.71 | 0.39 | 0.0 | 20.0 | 1.0 |
sec | 2002_01 | dssp | 1ez4:B | 65.8 | 52 | 94 | 68 | 78 | 82 | 47 | 65.6 | 62 | 73 | 64 | 0.0 | 0.35 | 0.34 | 0.36 | 0.57 | 0.66 | 0.37 | 0.0 | 20.0 | 2.0 |
sec | 2002_01 | dssp | 1hj0:A | 56.1 | 43 | 100 | 0 | 0 | 100 | 33 | 58.3 | 59 | 100 | 54 | 0.0 | 0.18 | 0.20 | 0.17 | 0.38 | 1.0 | 0.38 | 100.0 | 43.0 | 0.00 |
sec | 2002_01 | dssp | 1hzm:A | 67.5 | 72 | 51 | 72 | 53 | 64 | 83 | 57.4 | 67 | 56 | 54 | 1.2 | 0.21 | 0.22 | 0.20 | 0.41 | 0.58 | 0.39 | 100.0 | 11.0 | 2.0 |
sec | 2002_01 | dssp | 1ijh:A | 97.2 | 95 | 100 | 98 | 95 | 97 | 96 | 94.8 | 89 | 99 | 96 | 0.0 | 0.87 | 0.88 | 0.88 | 0.96 | 0.96 | 0.94 | 100.0 | 1.0 | 0.00 |
sec | 2002_01 | dssp | 1ijl:A | 80.5 | 74 | 97 | 77 | 50 | 87 | 75 | 74.2 | 74 | 60 | 76 | 0.8 | 0.45 | 0.46 | 0.44 | 0.75 | 0.58 | 0.63 | 100.0 | 11.0 | 4.0 |
sec | 2002_01 | dssp | 1jad:A | 79.8 | 81 | 95 | 0 | 0 | 71 | 46 | 38.2 | 36 | 100 | 60 | 4.1 | 0.19 | 0.25 | 0.14 | 0.46 | 1.0 | 0.48 | 100.0 | 12.0 | 4.0 |
sec | 2002_01 | dssp | 1jgk:A | 89.4 | 0 | 0 | 76 | 95 | 97 | 90 | 85.7 | 100 | 65 | 100 | 3.0 | 0.57 | 0.60 | 0.54 | 1.0 | 0.77 | 0.83 | 100.0 | 3.0 | 7.0 |
sec | 2002_01 | dssp | 1jgs:A | 85.5 | 94 | 88 | 72 | 88 | 70 | 78 | 83.1 | 87 | 81 | 72 | 0.0 | 0.49 | 0.48 | 0.51 | 0.75 | 0.78 | 0.64 | 100.0 | 4.0 | 1.0 |
sec | 2002_01 | dssp | 1jh1:A | 98.7 | 94 | 100 | 100 | 100 | 100 | 97 | 99.7 | 100 | 100 | 99 | 0.0 | 0.94 | 0.93 | 0.95 | 0.96 | 1.0 | 0.97 | 100.0 | 1.0 | 0.00 |
sec | 2002_01 | dssp | 1jke:A | 64.8 | 82 | 62 | 54 | 75 | 66 | 58 | 58.6 | 91 | 47 | 54 | 7.5 | 0.22 | 0.23 | 0.23 | 0.61 | 0.44 | 0.40 | 0.0 | 7.0 | 11.0 |
sec | 2002_01 | dssp | 1joc:A | 44.7 | 27 | 65 | 25 | 50 | 78 | 37 | 19.3 | 11 | 25 | 61 | 3.2 | 0.04 | 0.04 | 0.04 | 0.10 | 0.30 | 0.11 | 100.0 | 32.0 | 4.0 |
sec | 2002_01 | dssp | 1jr8:A | 84.8 | 81 | 98 | 0 | 0 | 90 | 73 | 78.2 | 76 | 100 | 82 | 1.9 | 0.45 | 0.51 | 0.40 | 0.74 | 1.0 | 0.71 | 100.0 | 11.0 | 3.0 |
sec | 2002_01 | dssp | 1jr8:B | 84.8 | 79 | 98 | 0 | 0 | 96 | 69 | 81.2 | 75 | 100 | 98 | 1.9 | 0.45 | 0.51 | 0.40 | 0.70 | 1.0 | 0.73 | 100.0 | 13.0 | 1.0 |
sec | 2002_01 | dssp | 1jra:A | 85.8 | 81 | 96 | 0 | 0 | 94 | 75 | 82.2 | 76 | 100 | 98 | 1.8 | 0.45 | 0.50 | 0.42 | 0.72 | 1.0 | 0.75 | 100.0 | 10.0 | 1.0 |
sec | 2002_01 | dssp | 1jra:C | 84.8 | 82 | 96 | 0 | 0 | 88 | 75 | 80.1 | 77 | 100 | 85 | 1.9 | 0.43 | 0.49 | 0.38 | 0.73 | 1.0 | 0.71 | 100.0 | 9.0 | 3.0 |
sec | 2002_01 | dssp | 1jra:D | 81.6 | 78 | 96 | 0 | 0 | 88 | 73 | 88.4 | 91 | 100 | 83 | 3.8 | 0.38 | 0.44 | 0.33 | 0.68 | 1.0 | 0.69 | 0.0 | 12.0 | 5.0 |
sec | 2002_01 | dssp | 1jy8:A | 73.5 | 71 | 81 | 58 | 84 | 90 | 63 | 58.6 | 75 | 40 | 68 | 5.8 | 0.34 | 0.34 | 0.35 | 0.64 | 0.60 | 0.60 | 100.0 | 4.0 | 9.0 |
sec | 2002_01 | dssp | 1k04:A | 81.0 | 81 | 92 | 0 | 0 | 77 | 58 | 74.0 | 74 | 100 | 70 | 2.1 | 0.25 | 0.29 | 0.22 | 0.53 | 1.0 | 0.56 | 100.0 | 9.0 | 2.0 |
sec | 2002_01 | dssp | 1k2f:A | 58.9 | 60 | 43 | 44 | 77 | 73 | 59 | 58.3 | 58 | 62 | 54 | 10.5 | 0.14 | 0.15 | 0.15 | 0.36 | 0.41 | 0.39 | 100.0 | 7.0 | 17.0 |
sec | 2002_01 | dssp | 1k7c:A | 99.1 | 100 | 100 | 94 | 100 | 100 | 98 | 97.5 | 100 | 86 | 100 | 0.0 | 0.96 | 0.96 | 0.97 | 1.0 | 0.96 | 0.98 | 100.0 | 0.00 | 0.00 |
sec | 2002_01 | dssp | 1k8t:A | 61.2 | 62 | 72 | 42 | 35 | 67 | 62 | 58.1 | 63 | 45 | 56 | 8.4 | 0.12 | 0.13 | 0.13 | 0.45 | 0.26 | 0.38 | 100.0 | 6.0 | 3.0 |
sec | 2002_01 | dssp | 1k9q:A | 82.5 | 0 | 0 | 53 | 87 | 96 | 81 | 73.5 | 100 | 61 | 79 | 0.0 | 0.30 | 0.27 | 0.34 | 1.0 | 0.58 | 0.58 | 100.0 | 0.00 | 12.0 |
sec | 2002_01 | dssp | 1k9r:A | 77.5 | 0 | 0 | 46 | 87 | 96 | 75 | 73.4 | 100 | 60 | 81 | 0.0 | 0.23 | 0.21 | 0.27 | 1.0 | 0.51 | 0.51 | 100.0 | 0.00 | 17.0 |
sec | 2002_01 | dssp | 1kb0:A | 73.3 | 7 | 22 | 63 | 90 | 93 | 69 | 62.0 | 11 | 73 | 64 | 2.0 | 0.28 | 0.25 | 0.33 | 0.07 | 0.65 | 0.53 | 100.0 | 7.0 | 10.0 |
sec | 2002_01 | dssp | 1kbe:A | 55.1 | 0 | 0 | 18 | 22 | 65 | 73 | 37.2 | 100 | 21 | 39 | 0.0 | 0.05 | 0.06 | 0.04 | 1.0 | -0.00 | -0.14 | 100.0 | 12.0 | 4.0 |
sec | 2002_01 | dssp | 1khv:B | 70.2 | 80 | 82 | 31 | 58 | 76 | 61 | 63.6 | 82 | 38 | 53 | 1.8 | 0.28 | 0.27 | 0.29 | 0.67 | 0.34 | 0.44 | 100.0 | 1.0 | 8.0 |
sec | 2002_01 | dssp | 1kkc:A | 91.0 | 92 | 99 | 76 | 90 | 95 | 79 | 87.0 | 86 | 88 | 88 | 0.0 | 0.68 | 0.68 | 0.68 | 0.90 | 0.80 | 0.80 | 100.0 | 3.0 | 2.0 |
sec | 2002_01 | dssp | 1kkc:B | 90.0 | 92 | 98 | 72 | 90 | 93 | 77 | 84.7 | 83 | 88 | 87 | 0.0 | 0.65 | 0.65 | 0.66 | 0.89 | 0.78 | 0.78 | 100.0 | 3.0 | 2.0 |
sec | 2002_01 | dssp | 1kkc:X | 90.0 | 92 | 98 | 72 | 90 | 93 | 78 | 84.8 | 83 | 88 | 87 | 0.0 | 0.65 | 0.65 | 0.66 | 0.89 | 0.78 | 0.78 | 100.0 | 3.0 | 2.0 |
sec | 2002_01 | dssp | 1kni:A | 69.8 | 58 | 100 | 66 | 100 | 100 | 46 | 71.5 | 75 | 66 | 64 | 0.0 | 0.42 | 0.43 | 0.42 | 0.57 | 0.80 | 0.52 | 100.0 | 27.0 | 3.0 |
sec | 2002_01 | dssp | 1knz:A | 70.4 | 67 | 93 | 0 | 0 | 80 | 41 | 71.4 | 70 | 100 | 77 | 3.7 | 0.15 | 0.20 | 0.12 | 0.39 | 1.0 | 0.43 | 100.0 | 22.0 | 3.0 |
sec | 2002_01 | dssp | 1kov:A | 71.5 | 0 | 0 | 50 | 45 | 78 | 82 | 55.6 | 100 | 42 | 58 | 0.0 | 0.07 | 0.08 | 0.07 | 1.0 | 0.29 | 0.27 | 100.0 | 1.0 | 2.0 |
sec | 2002_01 | dssp | 1kpl:B | 65.0 | 65 | 90 | 0 | 0 | 66 | 51 | 59.0 | 63 | 0 | 46 | 13.3 | 0.14 | 0.18 | 0.11 | 0.36 | -0.04 | 0.44 | 0.0 | 21.0 | 14.0 |
sec | 2002_01 | dssp | THIS_month:psum | 76.4 | 62 | 73 | 44 | 54 | 85 | 68 | 70.3 | 75.6 | 71.8 | 72.8 | 2.4 | 0.38 | 0.39 | 0.37 | 0.67 | 0.69 | 0.56 | 85.7 | 10 | 4.8 |
sec | 2002_01 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_01 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |