METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2001_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_11 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_11 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2001_11 | dssp | THIS_month:psum | 67.2 | 53 | 57 | 20 | 31 | 76 | 66 | 54.5 | 69 | 60.3 | 65 | 8.1 | 0.20 | 0.22 | 0.18 | 0.58 | 0.64 | 0.43 | 84.6 | 13.3 | 11.6 |
sec | 2001_11 | dssp | 1ea6:A | 65.9 | 81 | 52 | 45 | 66 | 68 | 77 | 67.9 | 58 | 63 | 78 | 9.4 | 0.20 | 0.21 | 0.21 | 0.50 | 0.43 | 0.50 | 100.0 | 14.0 | 8.0 |
sec | 2001_11 | dssp | 1ea6:B | 62.4 | 71 | 58 | 43 | 66 | 67 | 63 | 59.8 | 51 | 60 | 69 | 9.4 | 0.16 | 0.16 | 0.17 | 0.44 | 0.41 | 0.41 | 0.0 | 7.0 | 9.0 |
sec | 2001_11 | dssp | 1go9:A | 80.5 | 79 | 96 | 0 | 0 | 85 | 46 | 46.4 | 43 | 100 | 78 | 0.0 | 0.25 | 0.29 | 0.21 | 0.52 | 1.0 | 0.52 | 100.0 | 14.0 | 0.00 |
sec | 2001_11 | dssp | 1goe:A | 80.5 | 79 | 96 | 0 | 0 | 85 | 46 | 46.4 | 43 | 100 | 78 | 0.0 | 0.25 | 0.29 | 0.21 | 0.52 | 1.0 | 0.52 | 100.0 | 14.0 | 0.00 |
sec | 2001_11 | dssp | 1hdl:A | 54.5 | 53 | 68 | 0 | 0 | 61 | 54 | 61.6 | 65 | 0 | 61 | 10.9 | 0.05 | 0.07 | 0.05 | 0.18 | -0.06 | 0.28 | 100.0 | 12.0 | 7.0 |
sec | 2001_11 | dssp | 1hek:A | 72.4 | 69 | 93 | 0 | 0 | 75 | 68 | 70.2 | 69 | 100 | 71 | 0.8 | 0.32 | 0.37 | 0.27 | 0.65 | 1.0 | 0.46 | 0.0 | 13.0 | 9.0 |
sec | 2001_11 | dssp | 1i26:A | 82.4 | 0 | 0 | 0 | 0 | 100 | 82 | 28.5 | 100 | 0 | 34 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 0.00 | 17.0 |
sec | 2001_11 | dssp | 1jo6:A | 66.7 | 62 | 50 | 0 | 0 | 67 | 89 | 34.6 | 69 | 100 | 32 | 0.0 | 0.16 | 0.22 | 0.11 | 0.45 | 1.0 | 0.23 | 100.0 | 4.0 | 15.0 |
sec | 2001_11 | dssp | 1jrj:A | 79.5 | 66 | 100 | 0 | 0 | 100 | 65 | 82.7 | 87 | 100 | 75 | 0.0 | 0.42 | 0.43 | 0.42 | 0.65 | 1.0 | 0.65 | 100.0 | 20.0 | 0.00 |
sec | 2001_11 | dssp | 1jyo:E | 63.7 | 65 | 69 | 50 | 37 | 65 | 67 | 58.3 | 57 | 48 | 62 | 11.7 | 0.16 | 0.17 | 0.16 | 0.35 | 0.34 | 0.47 | 100.0 | 2.0 | 3.0 |
sec | 2001_11 | dssp | 1jyo:F | 65.4 | 64 | 66 | 60 | 35 | 68 | 76 | 59.8 | 55 | 46 | 67 | 12.5 | 0.20 | 0.21 | 0.20 | 0.34 | 0.38 | 0.54 | 100.0 | 1.0 | 6.0 |
sec | 2001_11 | dssp | 1k5j:B | 48.5 | 0 | 0 | 30 | 100 | 76 | 71 | 43.8 | 100 | 29 | 73 | 30.3 | 0.24 | 0.30 | 0.20 | 1.0 | 0.38 | 0.56 | 100.0 | 39.0 | 42.0 |
sec | 2001_11 | dssp | 1k5j:C | 51.5 | 0 | 0 | 36 | 100 | 71 | 66 | 48.8 | 100 | 38 | 67 | 21.2 | 0.20 | 0.25 | 0.16 | 1.0 | 0.44 | 0.44 | 100.0 | 33.0 | 36.0 |
sec | 2001_11 | dssp | THIS_month:psum | 67.2 | 53 | 57 | 20 | 31 | 76 | 66 | 54.5 | 69 | 60.3 | 65 | 8.1 | 0.20 | 0.22 | 0.18 | 0.58 | 0.64 | 0.43 | 84.6 | 13.3 | 11.6 |
sec | 2001_11 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_11 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |