METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2001_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_07 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_07 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2001_07 | dssp | THIS_month:psum | 69.9 | 63 | 73 | 32 | 44 | 80 | 66 | 63.6 | 63.2 | 51.7 | 63.7 | 4.5 | 0.28 | 0.28 | 0.28 | 0.54 | 0.51 | 0.49 | 91.6 | 10.6 | 6.7 |
sec | 2001_07 | dssp | 1dcj:A | 92.6 | 86 | 100 | 90 | 90 | 97 | 90 | 97.5 | 100 | 90 | 100 | 1.2 | 0.73 | 0.72 | 0.74 | 0.90 | 0.86 | 0.87 | 100.0 | 3.0 | 0.00 |
sec | 2001_07 | dssp | 1e44:B | 61.5 | 27 | 33 | 13 | 57 | 94 | 65 | 33.5 | 21 | 13 | 48 | 6.2 | 0.09 | 0.07 | 0.12 | 0.22 | 0.15 | 0.34 | 100.0 | 2.0 | 23.0 |
sec | 2001_07 | dssp | 1faz:A | 44.3 | 18 | 73 | 0 | 0 | 88 | 41 | 36.7 | 21 | 100 | 56 | 4.9 | 0.04 | 0.04 | 0.05 | 0.09 | 1.0 | 0.17 | 0.0 | 47.0 | 4.0 |
sec | 2001_07 | dssp | 1g7o:A | 64.7 | 65 | 79 | 31 | 38 | 71 | 53 | 53.0 | 48 | 39 | 66 | 3.2 | 0.12 | 0.13 | 0.13 | 0.41 | 0.29 | 0.35 | 100.0 | 10.0 | 1.0 |
sec | 2001_07 | dssp | 1gc5:A | 38.1 | 10 | 95 | 1 | 33 | 98 | 35 | 11.8 | 12 | 1 | 16 | 0.2 | 0.08 | 0.03 | 0.13 | 0.22 | 0.02 | 0.13 | 100.0 | 41.0 | 19.0 |
sec | 2001_07 | dssp | 1h5p:A | 47.4 | 0 | 0 | 45 | 28 | 79 | 58 | 37.0 | 0 | 46 | 51 | 16.8 | 0.06 | 0.05 | 0.08 | 1.0 | 0.09 | 0.31 | 100.0 | 30.0 | 13.0 |
sec | 2001_07 | dssp | 1hq0:A | 51.2 | 38 | 28 | 32 | 62 | 72 | 57 | 46.2 | 48 | 41 | 48 | 13.8 | 0.06 | 0.06 | 0.06 | 0.14 | 0.25 | 0.31 | 100.0 | 7.0 | 18.0 |
sec | 2001_07 | dssp | 1hr6:A | 78.6 | 83 | 85 | 53 | 82 | 83 | 71 | 75.1 | 88 | 58 | 68 | 1.7 | 0.39 | 0.38 | 0.40 | 0.72 | 0.61 | 0.60 | 100.0 | 0.00 | 5.0 |
sec | 2001_07 | dssp | 1hr7:A | 78.8 | 83 | 85 | 53 | 82 | 83 | 72 | 75.6 | 88 | 59 | 69 | 1.7 | 0.39 | 0.38 | 0.41 | 0.72 | 0.61 | 0.60 | 100.0 | 0.00 | 5.0 |
sec | 2001_07 | dssp | 1hr8:A | 84.7 | 86 | 92 | 67 | 92 | 90 | 76 | 75.3 | 80 | 56 | 80 | 0.0 | 0.55 | 0.54 | 0.57 | 0.82 | 0.75 | 0.70 | 100.0 | 2.0 | 4.0 |
sec | 2001_07 | dssp | 1hr9:A | 84.7 | 85 | 91 | 68 | 92 | 90 | 77 | 75.9 | 79 | 56 | 81 | 0.0 | 0.54 | 0.53 | 0.56 | 0.81 | 0.75 | 0.69 | 100.0 | 2.0 | 4.0 |
sec | 2001_07 | dssp | 1hzg:A | 52.2 | 38 | 29 | 34 | 65 | 73 | 57 | 45.7 | 48 | 40 | 48 | 12.5 | 0.06 | 0.06 | 0.07 | 0.16 | 0.27 | 0.31 | 100.0 | 5.0 | 17.0 |
sec | 2001_07 | dssp | 1i3j:A | 70.8 | 32 | 100 | 63 | 43 | 94 | 72 | 63.4 | 35 | 68 | 76 | 6.2 | 0.27 | 0.25 | 0.31 | 0.49 | 0.45 | 0.54 | 100.0 | 21.0 | 5.0 |
sec | 2001_07 | dssp | 1ijx:A | 68.8 | 54 | 77 | 16 | 50 | 90 | 66 | 50.3 | 44 | 25 | 61 | 3.2 | 0.18 | 0.16 | 0.21 | 0.47 | 0.24 | 0.47 | 100.0 | 12.0 | 6.0 |
sec | 2001_07 | dssp | 1ijy:A | 67.2 | 53 | 84 | 28 | 22 | 82 | 65 | 53.5 | 46 | 17 | 67 | 0.8 | 0.18 | 0.18 | 0.19 | 0.51 | 0.20 | 0.36 | 100.0 | 15.0 | 1.0 |
sec | 2001_07 | dssp | 1j8f:A | 66.7 | 69 | 72 | 80 | 66 | 58 | 58 | 76.8 | 82 | 100 | 61 | 2.2 | 0.24 | 0.24 | 0.24 | 0.42 | 0.69 | 0.33 | 100.0 | 2.0 | 2.0 |
sec | 2001_07 | dssp | 1jc5:A | 74.5 | 96 | 66 | 57 | 78 | 78 | 76 | 72.8 | 100 | 59 | 73 | 4.8 | 0.37 | 0.37 | 0.37 | 0.74 | 0.53 | 0.58 | 100.0 | 8.0 | 9.0 |
sec | 2001_07 | dssp | 1jei:A | 69.8 | 70 | 66 | 0 | 0 | 69 | 85 | 76.5 | 75 | 100 | 77 | 3.7 | 0.17 | 0.20 | 0.14 | 0.48 | 1.0 | 0.48 | 100.0 | 1.0 | 9.0 |
sec | 2001_07 | dssp | 1jek:A | 97.5 | 97 | 100 | 0 | 0 | 100 | 66 | 98.8 | 100 | 100 | 75 | 0.0 | 0.66 | 0.76 | 0.57 | 0.80 | 1.0 | 0.80 | 100.0 | 2.0 | 0.00 |
sec | 2001_07 | dssp | 1jek:B | 94.1 | 93 | 100 | 0 | 0 | 100 | 50 | 98.0 | 100 | 100 | 66 | 0.0 | 0.51 | 0.64 | 0.39 | 0.68 | 1.0 | 0.68 | 100.0 | 5.0 | 0.00 |
sec | 2001_07 | dssp | 1jfi:A | 76.7 | 97 | 74 | 0 | 0 | 45 | 90 | 68.9 | 79 | 0 | 55 | 3.3 | 0.25 | 0.19 | 0.32 | 0.49 | 1.0 | 0.53 | 100.0 | 20.0 | 3.0 |
sec | 2001_07 | dssp | 1jfi:B | 91.9 | 97 | 94 | 0 | 0 | 77 | 84 | 94.6 | 100 | 0 | 80 | 0.7 | 0.51 | 0.49 | 0.54 | 0.79 | -0.01 | 0.76 | 100.0 | 2.0 | 0.00 |
sec | 2001_07 | dssp | 1jfy:A | 60.1 | 79 | 58 | 25 | 53 | 60 | 65 | 52.5 | 62 | 33 | 49 | 13.2 | 0.12 | 0.12 | 0.13 | 0.39 | 0.25 | 0.42 | 0.0 | 14.0 | 11.0 |
sec | 2001_07 | dssp | 1jg8:A | 62.7 | 67 | 74 | 33 | 45 | 71 | 56 | 58.1 | 63 | 41 | 58 | 8.1 | 0.14 | 0.14 | 0.15 | 0.47 | 0.27 | 0.40 | 100.0 | 4.0 | 4.0 |
sec | 2001_07 | dssp | THIS_month:psum | 69.9 | 63 | 73 | 32 | 44 | 80 | 66 | 63.6 | 63.2 | 51.7 | 63.7 | 4.5 | 0.28 | 0.28 | 0.28 | 0.54 | 0.51 | 0.49 | 91.6 | 10.6 | 6.7 |
sec | 2001_07 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_07 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_07 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |