METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2002_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_05 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_05 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2002_05 | dssp | THIS_month:psum | 67.0 | 57 | 63 | 37 | 48 | 74 | 64 | 61.1 | 58.1 | 66.9 | 65 | 5.1 | 0.22 | 0.22 | 0.23 | 0.45 | 0.60 | 0.43 | 83.7 | 12.4 | 7.8 |
sec | 2002_05 | dssp | 1cix:A | 75.0 | 0 | 0 | 27 | 50 | 90 | 78 | 67.6 | 100 | 20 | 89 | 0.0 | 0.05 | 0.04 | 0.06 | 1.0 | 0.22 | 0.22 | 100.0 | 0.00 | 11.0 |
sec | 2002_05 | dssp | 1go4:G | 85.0 | 87 | 92 | 62 | 100 | 85 | 64 | 66.9 | 64 | 75 | 83 | 2.0 | 0.44 | 0.45 | 0.45 | 0.67 | 0.77 | 0.66 | 100.0 | 3.0 | 3.0 |
sec | 2002_05 | dssp | 1hxv:A | 80.0 | 66 | 85 | 80 | 78 | 82 | 80 | 70.1 | 66 | 89 | 60 | 0.0 | 0.40 | 0.40 | 0.41 | 0.73 | 0.67 | 0.59 | 100.0 | 2.0 | 1.0 |
sec | 2002_05 | dssp | 1i36:A | 70.8 | 68 | 89 | 62 | 53 | 78 | 56 | 63.5 | 57 | 69 | 78 | 6.4 | 0.25 | 0.26 | 0.24 | 0.57 | 0.50 | 0.50 | 100.0 | 13.0 | 2.0 |
sec | 2002_05 | dssp | 1iko:P | 68.8 | 0 | 0 | 58 | 67 | 85 | 74 | 58.0 | 0 | 52 | 69 | 4.9 | 0.16 | 0.15 | 0.18 | -0.07 | 0.48 | 0.44 | 100.0 | 4.0 | 4.0 |
sec | 2002_05 | dssp | 1ir6:A | 70.4 | 79 | 71 | 46 | 70 | 66 | 68 | 65.5 | 68 | 53 | 65 | 4.6 | 0.22 | 0.21 | 0.23 | 0.48 | 0.52 | 0.47 | 100.0 | 4.0 | 3.0 |
sec | 2002_05 | dssp | 1jjv:A | 86.2 | 96 | 83 | 88 | 88 | 73 | 89 | 94.2 | 100 | 91 | 88 | 0.0 | 0.59 | 0.58 | 0.60 | 0.80 | 0.86 | 0.71 | 100.0 | 6.0 | 0.00 |
sec | 2002_05 | dssp | 1jni:A | 64.5 | 0 | 0 | 50 | 13 | 86 | 80 | 58.3 | 0 | 50 | 75 | 11.2 | 0.10 | 0.09 | 0.12 | 1.0 | 0.15 | 0.38 | 100.0 | 22.0 | 17.0 |
sec | 2002_05 | dssp | 1jsx:A | 82.9 | 100 | 81 | 0 | 0 | 33 | 100 | 83.9 | 97 | 100 | 44 | 0.0 | 0.33 | 0.23 | 0.44 | 0.52 | 1.0 | 0.52 | 100.0 | 17.0 | 0.00 |
sec | 2002_05 | dssp | 1juh:B | 71.4 | 20 | 66 | 59 | 80 | 88 | 67 | 73.1 | 25 | 73 | 78 | 1.2 | 0.20 | 0.18 | 0.23 | 0.34 | 0.51 | 0.47 | 100.0 | 4.0 | 11.0 |
sec | 2002_05 | dssp | 1k3r:B | 76.1 | 75 | 72 | 60 | 82 | 83 | 76 | 74.0 | 81 | 56 | 79 | 3.0 | 0.34 | 0.34 | 0.36 | 0.63 | 0.63 | 0.58 | 100.0 | 1.0 | 6.0 |
sec | 2002_05 | dssp | 1k45:A | 63.7 | 33 | 9 | 48 | 79 | 80 | 67 | 56.5 | 50 | 54 | 58 | 7.7 | 0.14 | 0.15 | 0.13 | 0.12 | 0.40 | 0.43 | 0.0 | 8.0 | 18.0 |
sec | 2002_05 | dssp | 1kjy:B | 57.1 | 64 | 55 | 0 | 0 | 50 | 60 | 55.6 | 61 | 100 | 50 | 0.0 | 0.01 | 0.01 | 0.02 | 0.14 | 1.0 | 0.14 | 100.0 | 8.0 | 0.00 |
sec | 2002_05 | dssp | 1kr7:A | 80.0 | 78 | 92 | 0 | 0 | 83 | 59 | 74.2 | 72 | 100 | 78 | 0.0 | 0.26 | 0.28 | 0.25 | 0.56 | 1.0 | 0.56 | 100.0 | 10.0 | 0.00 |
sec | 2002_05 | dssp | 1ksh:B | 49.1 | 81 | 30 | 31 | 86 | 67 | 46 | 49.8 | 95 | 34 | 63 | 20.0 | 0.12 | 0.13 | 0.12 | 0.36 | 0.30 | 0.34 | 100.0 | 23.0 | 36.0 |
sec | 2002_05 | dssp | 1ktg:A | 66.4 | 90 | 62 | 36 | 100 | 89 | 57 | 50.4 | 69 | 37 | 59 | 13.1 | 0.33 | 0.33 | 0.35 | 0.61 | 0.49 | 0.58 | 100.0 | 13.0 | 27.0 |
sec | 2002_05 | dssp | 1kuu:A | 68.8 | 70 | 49 | 52 | 87 | 83 | 71 | 72.6 | 78 | 60 | 81 | 10.8 | 0.26 | 0.27 | 0.27 | 0.46 | 0.54 | 0.59 | 100.0 | 8.0 | 15.0 |
sec | 2002_05 | dssp | 1kv4:A | 33.3 | 6 | 100 | 0 | 0 | 100 | 41 | 35.7 | 10 | 100 | 100 | 26.1 | 0.19 | 0.22 | 0.17 | 0.14 | 1.0 | 0.42 | 100.0 | 66.0 | 26.0 |
sec | 2002_05 | dssp | 1kyq:B | 56.0 | 41 | 69 | 52 | 54 | 73 | 50 | 56.9 | 50 | 61 | 62 | 5.4 | 0.11 | 0.11 | 0.12 | 0.30 | 0.43 | 0.27 | 100.0 | 17.0 | 0.00 |
sec | 2002_05 | dssp | 1l1d:B | 69.4 | 41 | 84 | 50 | 80 | 97 | 64 | 56.5 | 40 | 58 | 66 | 4.0 | 0.28 | 0.25 | 0.33 | 0.50 | 0.53 | 0.54 | 100.0 | 13.0 | 10.0 |
sec | 2002_05 | dssp | 1l1s:A | 49.5 | 21 | 78 | 81 | 55 | 68 | 38 | 44.5 | 23 | 88 | 54 | 9.9 | 0.16 | 0.15 | 0.17 | 0.24 | 0.53 | 0.22 | 0.0 | 34.0 | 11.0 |
sec | 2002_05 | dssp | 1ldj:A | 92.7 | 100 | 93 | 0 | 0 | 71 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 0.65 | 0.65 | 0.66 | 0.85 | 1.0 | 0.80 | 100.0 | 5.0 | 1.0 |
sec | 2002_05 | dssp | 1ldj:B | 58.0 | 100 | 31 | 25 | 41 | 61 | 85 | 48.9 | 81 | 30 | 49 | 10.2 | 0.17 | 0.19 | 0.16 | 0.46 | 0.17 | 0.40 | 100.0 | 27.0 | 9.0 |
sec | 2002_05 | dssp | 1ldv:A | 58.0 | 15 | 27 | 25 | 47 | 82 | 63 | 24.7 | 15 | 20 | 28 | 2.6 | 0.03 | 0.03 | 0.04 | 0.11 | 0.19 | 0.12 | 100.0 | 6.0 | 12.0 |
sec | 2002_05 | dssp | 1lgj:A | 69.0 | 72 | 82 | 0 | 0 | 62 | 57 | 55.5 | 61 | 100 | 45 | 0.5 | 0.14 | 0.16 | 0.13 | 0.43 | 1.0 | 0.35 | 100.0 | 7.0 | 4.0 |
sec | 2002_05 | dssp | 1lgo:A | 64.5 | 67 | 88 | 0 | 0 | 58 | 59 | 57.4 | 61 | 100 | 50 | 7.7 | 0.15 | 0.19 | 0.12 | 0.48 | 1.0 | 0.38 | 0.0 | 15.0 | 16.0 |
sec | 2002_05 | dssp | 1lgz:A | 65.9 | 57 | 77 | 0 | 0 | 77 | 57 | 69.7 | 69 | 100 | 69 | 0.0 | 0.09 | 0.09 | 0.09 | 0.34 | 1.0 | 0.34 | 0.0 | 14.0 | 0.00 |
sec | 2002_05 | dssp | 1lh8:A | 60.3 | 54 | 93 | 0 | 0 | 81 | 33 | 44.9 | 42 | 100 | 57 | 0.0 | 0.13 | 0.16 | 0.11 | 0.34 | 1.0 | 0.29 | 0.0 | 32.0 | 1.0 |
sec | 2002_05 | dssp | 1li1:A | 68.4 | 0 | 0 | 57 | 90 | 94 | 61 | 56.3 | 0 | 58 | 66 | 1.7 | 0.27 | 0.22 | 0.32 | -0.04 | 0.58 | 0.48 | 100.0 | 8.0 | 16.0 |
sec | 2002_05 | dssp | 1li5:A | 74.1 | 80 | 84 | 56 | 78 | 76 | 63 | 66.4 | 88 | 51 | 54 | 0.6 | 0.36 | 0.36 | 0.38 | 0.69 | 0.59 | 0.48 | 100.0 | 1.0 | 5.0 |
sec | 2002_05 | dssp | 1lja:A | 77.8 | 87 | 83 | 0 | 0 | 55 | 65 | 64.0 | 70 | 100 | 49 | 0.6 | 0.16 | 0.17 | 0.16 | 0.46 | 1.0 | 0.45 | 100.0 | 3.0 | 1.0 |
sec | 2002_05 | dssp | 1lk8:A | 43.5 | 49 | 35 | 24 | 26 | 46 | 57 | 36.6 | 47 | 23 | 34 | 11.7 | 0.01 | 0.01 | 0.01 | 0.09 | 0.10 | 0.11 | 100.0 | 11.0 | 1.0 |
sec | 2002_05 | dssp | 1ll3:A | 67.0 | 70 | 77 | 46 | 56 | 73 | 62 | 65.6 | 80 | 38 | 66 | 5.5 | 0.20 | 0.20 | 0.21 | 0.56 | 0.40 | 0.44 | 100.0 | 3.0 | 3.0 |
sec | 2002_05 | dssp | 1ln4:A | 74.5 | 80 | 72 | 65 | 76 | 73 | 75 | 73.8 | 78 | 70 | 70 | 6.1 | 0.35 | 0.35 | 0.36 | 0.58 | 0.63 | 0.58 | 100.0 | 4.0 | 3.0 |
sec | 2002_05 | dssp | 1lpl:A | 78.9 | 63 | 100 | 70 | 75 | 86 | 77 | 84.6 | 72 | 77 | 91 | 0.0 | 0.40 | 0.38 | 0.42 | 0.77 | 0.61 | 0.57 | 100.0 | 4.0 | 2.0 |
sec | 2002_05 | dssp | 1lr0:A | 48.4 | 27 | 73 | 47 | 68 | 93 | 36 | 50.8 | 38 | 69 | 63 | 7.9 | 0.16 | 0.15 | 0.18 | 0.17 | 0.49 | 0.34 | 100.0 | 34.0 | 5.0 |
sec | 2002_05 | dssp | 1lu7:A | 53.7 | 80 | 62 | 40 | 17 | 33 | 68 | 36.8 | 42 | 21 | 35 | 6.2 | 0.12 | 0.13 | 0.12 | 0.45 | 0.14 | 0.21 | 0.0 | 11.0 | 12.0 |
sec | 2002_05 | dssp | THIS_month:psum | 67.0 | 57 | 63 | 37 | 48 | 74 | 64 | 61.1 | 58.1 | 66.9 | 65 | 5.1 | 0.22 | 0.22 | 0.23 | 0.45 | 0.60 | 0.43 | 83.7 | 12.4 | 7.8 |
sec | 2002_05 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_05 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |