METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2002_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_03 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_03 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2002_03 | dssp | THIS_month:psum | 71 | 65 | 63 | 47 | 63 | 78 | 65 | 68.0 | 70.9 | 61.3 | 66.0 | 5.1 | 0.30 | 0.30 | 0.30 | 0.53 | 0.54 | 0.49 | 80.7 | 8.2 | 9.4 |
sec | 2002_03 | dssp | 1gk7:A | 89.7 | 94 | 94 | 0 | 0 | 50 | 50 | 93.2 | 100 | 100 | 33 | 0.0 | 0.19 | 0.19 | 0.19 | 0.44 | 1.0 | 0.44 | 100.0 | 0.00 | 0.00 |
sec | 2002_03 | dssp | 1i60:A | 75.9 | 76 | 86 | 50 | 89 | 87 | 63 | 70.4 | 80 | 53 | 67 | 2.5 | 0.36 | 0.35 | 0.38 | 0.66 | 0.62 | 0.58 | 100.0 | 5.0 | 7.0 |
sec | 2002_03 | dssp | 1ib8:A | 76.8 | 100 | 74 | 71 | 78 | 68 | 77 | 70.5 | 100 | 62 | 65 | 1.2 | 0.45 | 0.46 | 0.45 | 0.81 | 0.63 | 0.54 | 0.0 | 7.0 | 3.0 |
sec | 2002_03 | dssp | 1j4w:A | 68.9 | 58 | 100 | 71 | 78 | 92 | 40 | 80.2 | 71 | 95 | 81 | 4.0 | 0.37 | 0.39 | 0.37 | 0.63 | 0.65 | 0.48 | 100.0 | 21.0 | 2.0 |
sec | 2002_03 | dssp | 1j5b:A | 94.6 | 94 | 100 | 0 | 0 | 100 | 50 | 97.3 | 100 | 100 | 50 | 0.0 | 0.51 | 0.64 | 0.40 | 0.68 | 1.0 | 0.68 | 100.0 | 5.0 | 0.00 |
sec | 2002_03 | dssp | 1j8c:A | 82.5 | 86 | 68 | 62 | 89 | 90 | 84 | 76.1 | 93 | 85 | 70 | 1.9 | 0.44 | 0.43 | 0.45 | 0.72 | 0.68 | 0.67 | 100.0 | 3.0 | 7.0 |
sec | 2002_03 | dssp | 1jjg:A | 60.8 | 66 | 16 | 65 | 65 | 57 | 82 | 36.2 | 58 | 68 | 29 | 4.9 | 0.16 | 0.18 | 0.14 | 0.24 | 0.49 | 0.35 | 100.0 | 18.0 | 0.00 |
sec | 2002_03 | dssp | 1jmk:O | 77.8 | 77 | 86 | 63 | 76 | 85 | 72 | 78.9 | 75 | 83 | 80 | 2.6 | 0.38 | 0.38 | 0.39 | 0.71 | 0.63 | 0.61 | 100.0 | 3.0 | 3.0 |
sec | 2002_03 | dssp | 1jmr:B | 80.6 | 93 | 85 | 57 | 90 | 75 | 70 | 80.9 | 93 | 77 | 67 | 0.8 | 0.50 | 0.49 | 0.53 | 0.79 | 0.66 | 0.59 | 100.0 | 4.0 | 7.0 |
sec | 2002_03 | dssp | 1jo8:A | 77.6 | 0 | 0 | 61 | 100 | 100 | 69 | 64.1 | 0 | 73 | 62 | 0.0 | 0.41 | 0.34 | 0.49 | 1.0 | 0.68 | 0.61 | 100.0 | 5.0 | 17.0 |
sec | 2002_03 | dssp | 1k11:A | 34.7 | 50 | 16 | 14 | 100 | 56 | 47 | 37.6 | 72 | 16 | 54 | 30.6 | 0.09 | 0.09 | 0.10 | -0.03 | 0.28 | 0.24 | 100.0 | 35.0 | 41.0 |
sec | 2002_03 | dssp | 1k24:A | 36.9 | 0 | 0 | 19 | 82 | 78 | 35 | 25.9 | 0 | 15 | 57 | 14.4 | 0.02 | 0.03 | 0.03 | -0.05 | 0.13 | 0.17 | 0.0 | 16.0 | 52.0 |
sec | 2002_03 | dssp | 1k8h:A | 67.7 | 88 | 45 | 44 | 71 | 75 | 88 | 74.6 | 77 | 57 | 86 | 16.5 | 0.31 | 0.31 | 0.31 | 0.50 | 0.41 | 0.68 | 0.0 | 19.0 | 12.0 |
sec | 2002_03 | dssp | 1kg0:C | 66.9 | 33 | 38 | 57 | 48 | 76 | 79 | 67.0 | 50 | 48 | 76 | 5.1 | 0.11 | 0.12 | 0.12 | 0.28 | 0.36 | 0.40 | 100.0 | 1.0 | 4.0 |
sec | 2002_03 | dssp | 1kil:E | 87.8 | 88 | 96 | 0 | 0 | 80 | 50 | 97.6 | 100 | 100 | 80 | 0.0 | 0.29 | 0.34 | 0.26 | 0.56 | 1.0 | 0.56 | 100.0 | 7.0 | 0.00 |
sec | 2002_03 | dssp | 1kj6:A | 51.1 | 20 | 25 | 15 | 28 | 74 | 58 | 35.9 | 25 | 11 | 49 | 2.2 | 0.04 | 0.04 | 0.05 | 0.13 | -0.00 | -0.04 | 100.0 | 2.0 | 13.0 |
sec | 2002_03 | dssp | 1kjk:A | 83.7 | 94 | 100 | 50 | 85 | 95 | 73 | 82.2 | 100 | 58 | 81 | 0.0 | 0.63 | 0.60 | 0.66 | 0.95 | 0.58 | 0.69 | 100.0 | 2.0 | 10.0 |
sec | 2002_03 | dssp | 1kl9:A | 80.0 | 100 | 100 | 76 | 76 | 80 | 80 | 64.8 | 100 | 63 | 63 | 0.0 | 0.44 | 0.44 | 0.44 | 1.0 | 0.58 | 0.59 | 100.0 | 0.00 | 0.00 |
sec | 2002_03 | dssp | 1kqf:B | 68.5 | 58 | 75 | 40 | 56 | 84 | 68 | 55.3 | 54 | 44 | 59 | 3.4 | 0.20 | 0.19 | 0.22 | 0.55 | 0.37 | 0.44 | 100.0 | 6.0 | 5.0 |
sec | 2002_03 | dssp | 1kqf:C | 63.4 | 61 | 91 | 85 | 16 | 66 | 42 | 55.9 | 58 | 41 | 44 | 11.1 | 0.14 | 0.18 | 0.11 | 0.37 | 0.33 | 0.37 | 0.0 | 25.0 | 13.0 |
sec | 2002_03 | dssp | 1kqr:A | 67.5 | 50 | 100 | 60 | 87 | 85 | 51 | 71.7 | 75 | 72 | 69 | 0.0 | 0.28 | 0.27 | 0.30 | 0.68 | 0.49 | 0.41 | 100.0 | 5.0 | 17.0 |
sec | 2002_03 | dssp | 1ktb:A | 74.5 | 73 | 78 | 59 | 85 | 83 | 68 | 67.8 | 61 | 70 | 72 | 1.0 | 0.35 | 0.34 | 0.37 | 0.65 | 0.65 | 0.52 | 0.0 | 2.0 | 7.0 |
sec | 2002_03 | dssp | 1kvk:A | 64.4 | 44 | 40 | 65 | 83 | 70 | 53 | 57.0 | 55 | 50 | 75 | 5.4 | 0.21 | 0.22 | 0.21 | 0.33 | 0.50 | 0.38 | 100.0 | 1.0 | 12.0 |
sec | 2002_03 | dssp | 1kvv:A | 79.8 | 74 | 79 | 66 | 57 | 85 | 85 | 90.5 | 96 | 58 | 93 | 2.8 | 0.40 | 0.40 | 0.40 | 0.67 | 0.56 | 0.64 | 100.0 | 1.0 | 1.0 |
sec | 2002_03 | dssp | 1kzy:C | 53.9 | 56 | 40 | 26 | 34 | 61 | 73 | 52.5 | 52 | 25 | 62 | 14.6 | 0.08 | 0.08 | 0.08 | 0.18 | 0.17 | 0.37 | 100.0 | 12.0 | 3.0 |
sec | 2002_03 | dssp | 1l1c:A | 80.0 | 66 | 25 | 68 | 88 | 90 | 90 | 86.1 | 100 | 72 | 94 | 9.0 | 0.44 | 0.47 | 0.41 | 0.35 | 0.65 | 0.78 | 100.0 | 9.0 | 9.0 |
sec | 2002_03 | dssp | THIS_month:psum | 71 | 65 | 63 | 47 | 63 | 78 | 65 | 68.0 | 70.9 | 61.3 | 66.0 | 5.1 | 0.30 | 0.30 | 0.30 | 0.53 | 0.54 | 0.49 | 80.7 | 8.2 | 9.4 |
sec | 2002_03 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_03 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |