METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2002_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_08 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_08 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2002_08 | dssp | THIS_month:psum | 70.8 | 63 | 62 | 38 | 48 | 74 | 66 | 62.4 | 65 | 55.5 | 62.7 | 6.2 | 0.24 | 0.23 | 0.24 | 0.51 | 0.48 | 0.48 | 76.9 | 9.6 | 7.8 |
sec | 2002_08 | dssp | 1h1j:S | 68.2 | 70 | 76 | 0 | 0 | 64 | 57 | 73.8 | 78 | 100 | 66 | 0.0 | 0.08 | 0.09 | 0.09 | 0.34 | 1.0 | 0.34 | 100.0 | 4.0 | 0.00 |
sec | 2002_08 | dssp | 1htw:A | 78.5 | 86 | 80 | 73 | 80 | 75 | 75 | 77.4 | 82 | 86 | 68 | 2.5 | 0.42 | 0.42 | 0.42 | 0.74 | 0.68 | 0.59 | 100.0 | 2.0 | 2.0 |
sec | 2002_08 | dssp | 1iw4:A | 72.7 | 0 | 0 | 40 | 50 | 94 | 80 | 64.5 | 0 | 40 | 82 | 7.2 | 0.23 | 0.19 | 0.27 | -0.07 | 0.34 | 0.50 | 100.0 | 9.0 | 3.0 |
sec | 2002_08 | dssp | 1jv1:A | 85.7 | 97 | 85 | 0 | 0 | 50 | 87 | 72.8 | 79 | 100 | 51 | 0.0 | 0.32 | 0.27 | 0.37 | 0.58 | 1.0 | 0.58 | 100.0 | 10.0 | 0.00 |
sec | 2002_08 | dssp | 1k4n:A | 68.4 | 84 | 66 | 44 | 95 | 76 | 60 | 63.0 | 69 | 49 | 69 | 8.5 | 0.29 | 0.29 | 0.31 | 0.59 | 0.56 | 0.50 | 0.0 | 9.0 | 18.0 |
sec | 2002_08 | dssp | 1koz:A | 80.6 | 0 | 0 | 50 | 42 | 86 | 89 | 49.8 | 100 | 29 | 53 | 0.0 | 0.10 | 0.11 | 0.10 | 1.0 | 0.34 | 0.34 | 100.0 | 0.00 | 2.0 |
sec | 2002_08 | dssp | 1kr4:A | 47.3 | 83 | 46 | 9 | 57 | 58 | 47 | 43.7 | 66 | 13 | 52 | 24.5 | 0.08 | 0.08 | 0.10 | 0.33 | 0.09 | 0.33 | 0.0 | 27.0 | 33.0 |
sec | 2002_08 | dssp | 1l7y:A | 75.5 | 63 | 100 | 67 | 67 | 85 | 74 | 67.8 | 63 | 75 | 65 | 2.1 | 0.37 | 0.36 | 0.39 | 0.76 | 0.54 | 0.55 | 100.0 | 7.0 | 0.00 |
sec | 2002_08 | dssp | 1l8d:A | 70.9 | 73 | 95 | 0 | 0 | 76 | 28 | 43.3 | 44 | 0 | 42 | 1.9 | 0.17 | 0.20 | 0.15 | 0.43 | -0.02 | 0.34 | 100.0 | 19.0 | 1.0 |
sec | 2002_08 | dssp | 1lmz:A | 69.5 | 68 | 85 | 25 | 4 | 72 | 71 | 53.8 | 50 | 25 | 59 | 6.4 | 0.21 | 0.23 | 0.18 | 0.54 | 0.05 | 0.50 | 0.0 | 10.0 | 10.0 |
sec | 2002_08 | dssp | 1luz:A | 77.6 | 64 | 56 | 68 | 86 | 93 | 79 | 86.0 | 75 | 81 | 95 | 10.5 | 0.39 | 0.40 | 0.40 | 0.51 | 0.62 | 0.76 | 100.0 | 2.0 | 9.0 |
sec | 2002_08 | dssp | 1lw7:A | 66.9 | 56 | 77 | 88 | 65 | 70 | 59 | 64.7 | 64 | 92 | 57 | 2.9 | 0.26 | 0.27 | 0.26 | 0.45 | 0.71 | 0.39 | 100.0 | 12.0 | 4.0 |
sec | 2002_08 | dssp | 1m4i:A | 59.7 | 76 | 49 | 34 | 81 | 71 | 62 | 51.4 | 75 | 32 | 57 | 14.3 | 0.18 | 0.18 | 0.19 | 0.41 | 0.40 | 0.45 | 100.0 | 15.0 | 20.0 |
sec | 2002_08 | dssp | THIS_month:psum | 70.8 | 63 | 62 | 38 | 48 | 74 | 66 | 62.4 | 65 | 55.5 | 62.7 | 6.2 | 0.24 | 0.23 | 0.24 | 0.51 | 0.48 | 0.48 | 76.9 | 9.6 | 7.8 |
sec | 2002_08 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_08 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |