METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2001_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_05 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_05 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2001_05 | dssp | THIS_month:psum | 65.3 | 38 | 47 | 20 | 34 | 80 | 61 | 46.3 | 55.9 | 33 | 49.6 | 2.8 | 0.13 | 0.13 | 0.14 | 0.54 | 0.34 | 0.26 | 90.9 | 7.2 | 14.2 |
sec | 2001_05 | dssp | 1c8b:A | 62.8 | 67 | 57 | 49 | 52 | 65 | 70 | 56.4 | 58 | 60 | 54 | 5.6 | 0.15 | 0.15 | 0.15 | 0.44 | 0.39 | 0.37 | 100.0 | 5.0 | 1.0 |
sec | 2001_05 | dssp | 1ews:A | 59.4 | 0 | 0 | 0 | 0 | 100 | 59 | 16.4 | 100 | 0 | 27 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 0.00 | 40.0 |
sec | 2001_05 | dssp | 1ezv:G | 49.5 | 20 | 61 | 60 | 22 | 72 | 60 | 30.6 | 28 | 60 | 28 | 15.0 | 0.07 | 0.08 | 0.08 | 0.16 | 0.23 | 0.30 | 100.0 | 27.0 | 18.0 |
sec | 2001_05 | dssp | 1fwo:A | 80.0 | 0 | 0 | 0 | 0 | 90 | 87 | 51.4 | 100 | 0 | 54 | 0.0 | 0.03 | 0.03 | 0.03 | 1.0 | -0.06 | -0.10 | 100.0 | 5.0 | 8.0 |
sec | 2001_05 | dssp | 1g4y:B | 69.1 | 72 | 88 | 0 | 0 | 57 | 32 | 41.9 | 40 | 0 | 63 | 2.4 | 0.08 | 0.10 | 0.07 | 0.26 | -0.01 | 0.26 | 100.0 | 14.0 | 1.0 |
sec | 2001_05 | dssp | 1g5v:A | 67.9 | 0 | 0 | 55 | 83 | 88 | 60 | 62.5 | 0 | 63 | 69 | 0.0 | 0.17 | 0.15 | 0.21 | 1.0 | 0.48 | 0.41 | 100.0 | 5.0 | 16.0 |
sec | 2001_05 | dssp | 1i7w:B | 70.6 | 57 | 66 | 0 | 0 | 75 | 82 | 40.1 | 64 | 100 | 37 | 0.0 | 0.18 | 0.22 | 0.15 | 0.48 | 1.0 | 0.31 | 100.0 | 3.0 | 9.0 |
sec | 2001_05 | dssp | 1ib2:A | 77.0 | 82 | 87 | 0 | 0 | 65 | 59 | 73.9 | 77 | 0 | 67 | 2.1 | 0.17 | 0.19 | 0.17 | 0.48 | -0.01 | 0.47 | 100.0 | 4.0 | 1.0 |
sec | 2001_05 | dssp | 1ifq:A | 62.2 | 54 | 76 | 30 | 90 | 93 | 52 | 56.8 | 57 | 42 | 66 | 4.7 | 0.22 | 0.20 | 0.25 | 0.48 | 0.45 | 0.45 | 0.0 | 11.0 | 17.0 |
sec | 2001_05 | dssp | 1ihn:A | 63.7 | 75 | 84 | 17 | 85 | 90 | 55 | 43.6 | 91 | 20 | 33 | 0.0 | 0.33 | 0.28 | 0.40 | 0.73 | 0.30 | 0.36 | 100.0 | 2.0 | 24.0 |
sec | 2001_05 | dssp | 1ija:A | 56.8 | 0 | 0 | 15 | 42 | 87 | 59 | 35.9 | 0 | 18 | 48 | 1.3 | 0.03 | 0.03 | 0.05 | -0.02 | 0.05 | 0.05 | 100.0 | 4.0 | 22.0 |
sec | 2001_05 | dssp | THIS_month:psum | 65.3 | 38 | 47 | 20 | 34 | 80 | 61 | 46.3 | 55.9 | 33 | 49.6 | 2.8 | 0.13 | 0.13 | 0.14 | 0.54 | 0.34 | 0.26 | 90.9 | 7.2 | 14.2 |
sec | 2001_05 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_05 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_05 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |