METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2001_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_09 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_09 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2001_09 | dssp | THIS_month:psum | 67.8 | 57 | 58 | 46 | 62 | 75 | 65 | 62.8 | 58.9 | 57.8 | 61.5 | 5.8 | 0.25 | 0.25 | 0.25 | 0.47 | 0.52 | 0.47 | 73.5 | 7.6 | 8.9 |
sec | 2001_09 | dssp | 1e1a:A | 54.2 | 33 | 1 | 35 | 86 | 75 | 59 | 46.3 | 40 | 34 | 60 | 10.2 | 0.10 | 0.12 | 0.10 | 0.03 | 0.35 | 0.30 | 0.0 | 18.0 | 30.0 |
sec | 2001_09 | dssp | 1e8c:A | 80.2 | 86 | 82 | 69 | 83 | 81 | 77 | 81.4 | 90 | 70 | 80 | 1.8 | 0.43 | 0.43 | 0.44 | 0.75 | 0.70 | 0.63 | 0.0 | 1.0 | 3.0 |
sec | 2001_09 | dssp | 1e8p:A | 60.9 | 0 | 0 | 50 | 81 | 90 | 54 | 47.4 | 0 | 62 | 50 | 0.0 | 0.18 | 0.13 | 0.24 | 1.0 | 0.49 | 0.30 | 100.0 | 15.0 | 15.0 |
sec | 2001_09 | dssp | 1e8q:A | 63.0 | 0 | 0 | 50 | 81 | 90 | 57 | 48.8 | 0 | 62 | 50 | 0.0 | 0.18 | 0.14 | 0.24 | 1.0 | 0.49 | 0.33 | 100.0 | 13.0 | 15.0 |
sec | 2001_09 | dssp | 1f45:B | 61.9 | 64 | 81 | 0 | 0 | 61 | 57 | 68.7 | 81 | 0 | 51 | 11.9 | 0.14 | 0.16 | 0.12 | 0.33 | -0.06 | 0.40 | 100.0 | 14.0 | 11.0 |
sec | 2001_09 | dssp | 1fex:A | 67.8 | 61 | 82 | 0 | 0 | 75 | 80 | 78.0 | 67 | 100 | 89 | 11.8 | 0.23 | 0.28 | 0.19 | 0.48 | 1.0 | 0.59 | 100.0 | 13.0 | 16.0 |
sec | 2001_09 | dssp | 1gd5:A | 56.9 | 53 | 48 | 28 | 33 | 70 | 70 | 34.8 | 35 | 25 | 36 | 15.3 | 0.11 | 0.12 | 0.12 | 0.25 | 0.15 | 0.44 | 100.0 | 3.0 | 3.0 |
sec | 2001_09 | dssp | 1gd7:A | 73.4 | 71 | 62 | 63 | 85 | 83 | 69 | 75.4 | 78 | 70 | 79 | 2.7 | 0.30 | 0.30 | 0.31 | 0.61 | 0.58 | 0.53 | 100.0 | 1.0 | 11.0 |
sec | 2001_09 | dssp | 1gd8:A | 84.8 | 93 | 93 | 61 | 92 | 83 | 64 | 91.3 | 94 | 86 | 88 | 0.9 | 0.54 | 0.53 | 0.55 | 0.84 | 0.71 | 0.64 | 100.0 | 0.00 | 6.0 |
sec | 2001_09 | dssp | 1h6k:A | 68.1 | 63 | 90 | 37 | 5 | 79 | 59 | 70.2 | 75 | 15 | 64 | 7.0 | 0.18 | 0.21 | 0.16 | 0.48 | 0.11 | 0.49 | 0.0 | 19.0 | 8.0 |
sec | 2001_09 | dssp | 1h8b:B | 82.6 | 88 | 88 | 0 | 0 | 66 | 66 | 92.8 | 100 | 100 | 72 | 0.0 | 0.24 | 0.24 | 0.24 | 0.54 | 1.0 | 0.54 | 100.0 | 0.00 | 0.00 |
sec | 2001_09 | dssp | 1hfo:A | 68.1 | 56 | 92 | 68 | 82 | 82 | 49 | 68.1 | 72 | 80 | 49 | 0.8 | 0.34 | 0.34 | 0.35 | 0.61 | 0.65 | 0.41 | 0.0 | 15.0 | 5.0 |
sec | 2001_09 | dssp | 1hno:A | 60.3 | 52 | 47 | 55 | 73 | 68 | 62 | 61.5 | 76 | 53 | 58 | 8.2 | 0.15 | 0.15 | 0.15 | 0.28 | 0.52 | 0.36 | 100.0 | 2.0 | 6.0 |
sec | 2001_09 | dssp | 1ho8:A | 67.9 | 75 | 80 | 0 | 0 | 55 | 68 | 38.8 | 41 | 100 | 33 | 5.6 | 0.14 | 0.17 | 0.12 | 0.45 | 1.0 | 0.42 | 100.0 | 3.0 | 11.0 |
sec | 2001_09 | dssp | 1hrk:A | 58.2 | 52 | 74 | 48 | 49 | 70 | 49 | 47.5 | 40 | 60 | 57 | 5.8 | 0.11 | 0.12 | 0.12 | 0.35 | 0.39 | 0.29 | 100.0 | 14.0 | 0.00 |
sec | 2001_09 | dssp | 1hze:A | 79.4 | 46 | 54 | 83 | 87 | 85 | 78 | 71.6 | 46 | 78 | 71 | 4.1 | 0.43 | 0.43 | 0.44 | 0.43 | 0.74 | 0.67 | 100.0 | 2.0 | 2.0 |
sec | 2001_09 | dssp | 1i18:A | 81.4 | 66 | 54 | 79 | 87 | 86 | 82 | 73.5 | 66 | 75 | 72 | 4.1 | 0.42 | 0.43 | 0.42 | 0.55 | 0.70 | 0.71 | 100.0 | 2.0 | 4.0 |
sec | 2001_09 | dssp | 1i8a:A | 51.3 | 7 | 2 | 34 | 68 | 75 | 63 | 37.6 | 8 | 32 | 44 | 17.4 | 0.11 | 0.12 | 0.11 | -0.09 | 0.23 | 0.38 | 100.0 | 14.0 | 23.0 |
sec | 2001_09 | dssp | 1i9g:A | 59.8 | 66 | 62 | 32 | 54 | 74 | 60 | 52.2 | 65 | 37 | 54 | 8.3 | 0.14 | 0.14 | 0.15 | 0.50 | 0.24 | 0.37 | 100.0 | 1.0 | 11.0 |
sec | 2001_09 | dssp | 1iqp:A | 78.5 | 85 | 83 | 56 | 94 | 71 | 64 | 72.7 | 79 | 55 | 65 | 2.4 | 0.33 | 0.32 | 0.34 | 0.58 | 0.71 | 0.54 | 100.0 | 0.00 | 3.0 |
sec | 2001_09 | dssp | 1j75:A | 45.6 | 30 | 100 | 27 | 23 | 100 | 38 | 39.4 | 39 | 27 | 49 | 17.5 | 0.21 | 0.21 | 0.22 | 0.39 | 0.05 | 0.44 | 100.0 | 40.0 | 3.0 |
sec | 2001_09 | dssp | 1j7v:R | 65.4 | 36 | 11 | 51 | 78 | 81 | 74 | 65.2 | 36 | 56 | 76 | 11.7 | 0.18 | 0.20 | 0.17 | 0.12 | 0.43 | 0.54 | 100.0 | 11.0 | 15.0 |
sec | 2001_09 | dssp | 1j8r:A | 48.0 | 25 | 2 | 26 | 85 | 78 | 49 | 36.8 | 33 | 23 | 61 | 10.7 | 0.05 | 0.06 | 0.05 | 0.02 | 0.26 | 0.24 | 0.0 | 15.0 | 39.0 |
sec | 2001_09 | dssp | 1j9y:A | 61.9 | 64 | 66 | 40 | 34 | 66 | 67 | 50.3 | 59 | 44 | 45 | 5.5 | 0.12 | 0.13 | 0.13 | 0.46 | 0.26 | 0.34 | 100.0 | 1.0 | 2.0 |
sec | 2001_09 | dssp | 1jce:A | 72.4 | 77 | 78 | 61 | 90 | 75 | 57 | 65.7 | 70 | 63 | 60 | 3.0 | 0.33 | 0.33 | 0.34 | 0.63 | 0.67 | 0.47 | 0.0 | 0.00 | 9.0 |
sec | 2001_09 | dssp | 1jcg:A | 71.3 | 78 | 75 | 60 | 89 | 72 | 58 | 67.8 | 74 | 60 | 65 | 2.9 | 0.32 | 0.31 | 0.33 | 0.61 | 0.65 | 0.45 | 0.0 | 1.0 | 9.0 |
sec | 2001_09 | dssp | 1jma:A | 69.5 | 64 | 49 | 50 | 86 | 81 | 71 | 57.0 | 64 | 55 | 56 | 3.4 | 0.24 | 0.23 | 0.25 | 0.46 | 0.56 | 0.45 | 100.0 | 5.0 | 12.0 |
sec | 2001_09 | dssp | 1jmt:A | 62.5 | 65 | 73 | 40 | 75 | 83 | 45 | 75.6 | 96 | 40 | 69 | 12.5 | 0.30 | 0.30 | 0.30 | 0.39 | 0.44 | 0.47 | 100.0 | 5.0 | 12.0 |
sec | 2001_09 | dssp | 1jnx:X | 66.2 | 66 | 64 | 78 | 58 | 61 | 73 | 61.6 | 68 | 72 | 54 | 4.8 | 0.21 | 0.22 | 0.21 | 0.46 | 0.59 | 0.41 | 0.0 | 1.0 | 6.0 |
sec | 2001_09 | dssp | 1jr3:A | 83.9 | 95 | 82 | 78 | 81 | 68 | 87 | 78.4 | 79 | 79 | 75 | 0.5 | 0.47 | 0.46 | 0.49 | 0.73 | 0.78 | 0.66 | 100.0 | 8.0 | 0.00 |
sec | 2001_09 | dssp | 1jr3:D | 70.4 | 92 | 69 | 34 | 86 | 47 | 69 | 68.4 | 80 | 42 | 55 | 4.4 | 0.22 | 0.19 | 0.25 | 0.49 | 0.51 | 0.41 | 0.0 | 17.0 | 6.0 |
sec | 2001_09 | dssp | 1jx3:A | 72.0 | 75 | 69 | 46 | 61 | 78 | 75 | 61.0 | 73 | 51 | 57 | 2.9 | 0.26 | 0.26 | 0.27 | 0.60 | 0.45 | 0.49 | 100.0 | 2.0 | 4.0 |
sec | 2001_09 | dssp | 1jx5:A | 79.6 | 0 | 0 | 66 | 73 | 86 | 86 | 72.3 | 0 | 72 | 72 | 2.4 | 0.25 | 0.27 | 0.24 | -0.01 | 0.56 | 0.59 | 100.0 | 2.0 | 3.0 |
sec | 2001_09 | dssp | 1jzt:A | 80.7 | 80 | 83 | 78 | 78 | 81 | 79 | 79.5 | 80 | 90 | 75 | 0.0 | 0.45 | 0.45 | 0.45 | 0.72 | 0.75 | 0.61 | 100.0 | 1.0 | 0.00 |
sec | 2001_09 | dssp | THIS_month:psum | 67.8 | 57 | 58 | 46 | 62 | 75 | 65 | 62.8 | 58.9 | 57.8 | 61.5 | 5.8 | 0.25 | 0.25 | 0.25 | 0.47 | 0.52 | 0.47 | 73.5 | 7.6 | 8.9 |
sec | 2001_09 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_09 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_09 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |