METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2002_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_07 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_07 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2002_07 | dssp | THIS_month:psum | 71.1 | 58 | 65 | 43 | 60 | 78 | 64 | 67.3 | 69.3 | 67.4 | 69.3 | 4.3 | 0.27 | 0.28 | 0.27 | 0.55 | 0.60 | 0.48 | 80 | 7.4 | 7.4 |
sec | 2002_07 | dssp | 1ifr:A | 77.0 | 0 | 0 | 66 | 83 | 86 | 79 | 75.2 | 100 | 70 | 79 | 4.4 | 0.28 | 0.31 | 0.25 | 1.0 | 0.56 | 0.62 | 0.0 | 5.0 | 9.0 |
sec | 2002_07 | dssp | 1ify:A | 85.7 | 86 | 96 | 0 | 0 | 84 | 80 | 89.7 | 100 | 100 | 76 | 0.0 | 0.50 | 0.56 | 0.46 | 0.79 | 1.0 | 0.70 | 100.0 | 6.0 | 4.0 |
sec | 2002_07 | dssp | 1ipa:A | 63.2 | 76 | 70 | 28 | 57 | 65 | 54 | 55.5 | 70 | 26 | 50 | 10.2 | 0.13 | 0.13 | 0.14 | 0.44 | 0.30 | 0.40 | 100.0 | 4.0 | 10.0 |
sec | 2002_07 | dssp | 1iu1:B | 70.7 | 0 | 0 | 66 | 89 | 83 | 72 | 70.0 | 0 | 69 | 77 | 8.1 | 0.27 | 0.29 | 0.26 | -0.08 | 0.60 | 0.58 | 0.0 | 6.0 | 13.0 |
sec | 2002_07 | dssp | 1j58:A | 61.0 | 43 | 58 | 39 | 80 | 85 | 56 | 51.7 | 45 | 42 | 62 | 2.1 | 0.15 | 0.14 | 0.18 | 0.42 | 0.41 | 0.32 | 100.0 | 4.0 | 19.0 |
sec | 2002_07 | dssp | 1j5p:A | 70.1 | 53 | 69 | 73 | 70 | 82 | 70 | 70.1 | 53 | 77 | 81 | 9.9 | 0.27 | 0.28 | 0.28 | 0.44 | 0.60 | 0.59 | 0.0 | 7.0 | 0.00 |
sec | 2002_07 | dssp | 1j5s:A | 71.6 | 77 | 81 | 43 | 37 | 69 | 66 | 71.8 | 90 | 45 | 56 | 3.5 | 0.21 | 0.22 | 0.21 | 0.57 | 0.34 | 0.47 | 100.0 | 2.0 | 1.0 |
sec | 2002_07 | dssp | 1j5u:A | 44.9 | 53 | 36 | 22 | 80 | 66 | 42 | 44.9 | 59 | 28 | 55 | 14.1 | 0.08 | 0.07 | 0.08 | 0.20 | 0.28 | 0.20 | 100.0 | 11.0 | 29.0 |
sec | 2002_07 | dssp | 1j5w:B | 68.3 | 60 | 71 | 54 | 92 | 82 | 60 | 67.9 | 56 | 72 | 79 | 2.9 | 0.27 | 0.26 | 0.29 | 0.48 | 0.65 | 0.45 | 0.0 | 5.0 | 8.0 |
sec | 2002_07 | dssp | 1j5y:A | 71.5 | 67 | 94 | 66 | 75 | 83 | 51 | 69.7 | 65 | 78 | 71 | 2.3 | 0.35 | 0.36 | 0.36 | 0.67 | 0.62 | 0.48 | 100.0 | 13.0 | 2.0 |
sec | 2002_07 | dssp | 1jmm:A | 67.9 | 51 | 56 | 58 | 73 | 80 | 68 | 50.4 | 61 | 59 | 43 | 3.9 | 0.20 | 0.20 | 0.21 | 0.44 | 0.51 | 0.44 | 100.0 | 1.0 | 6.0 |
sec | 2002_07 | dssp | 1k0h:A | 64.1 | 0 | 0 | 84 | 61 | 58 | 92 | 40.5 | 100 | 74 | 34 | 0.0 | 0.28 | 0.38 | 0.19 | 1.0 | 0.62 | 0.35 | 100.0 | 20.0 | 8.0 |
sec | 2002_07 | dssp | 1kam:C | 90.5 | 92 | 100 | 76 | 100 | 100 | 80 | 100.0 | 100 | 100 | 100 | 0.0 | 0.74 | 0.73 | 0.76 | 0.94 | 0.83 | 0.82 | 100.0 | 2.0 | 7.0 |
sec | 2002_07 | dssp | 1kc0:A | 74.8 | 83 | 82 | 46 | 71 | 78 | 67 | 69.9 | 92 | 55 | 56 | 2.3 | 0.33 | 0.32 | 0.34 | 0.70 | 0.50 | 0.53 | 100.0 | 0.00 | 6.0 |
sec | 2002_07 | dssp | 1key:B | 82.8 | 85 | 92 | 0 | 0 | 73 | 67 | 78.7 | 85 | 100 | 60 | 2.2 | 0.29 | 0.33 | 0.25 | 0.60 | 1.0 | 0.60 | 100.0 | 5.0 | 3.0 |
sec | 2002_07 | dssp | 1kkx:A | 72.5 | 81 | 70 | 0 | 0 | 63 | 75 | 67.4 | 70 | 100 | 63 | 0.0 | 0.15 | 0.15 | 0.16 | 0.45 | 1.0 | 0.45 | 100.0 | 7.0 | 0.00 |
sec | 2002_07 | dssp | 1kll:A | 65.6 | 30 | 100 | 68 | 76 | 89 | 55 | 64.5 | 44 | 75 | 69 | 3.1 | 0.28 | 0.25 | 0.31 | 0.49 | 0.59 | 0.45 | 100.0 | 19.0 | 3.0 |
sec | 2002_07 | dssp | 1kmi:Z | 76.2 | 84 | 84 | 0 | 0 | 47 | 47 | 59.6 | 61 | 100 | 52 | 0.0 | 0.08 | 0.09 | 0.09 | 0.31 | 1.0 | 0.31 | 100.0 | 0.00 | 0.00 |
sec | 2002_07 | dssp | 1kn6:A | 74.0 | 76 | 52 | 21 | 100 | 90 | 84 | 71.4 | 64 | 28 | 89 | 10.9 | 0.34 | 0.31 | 0.38 | 0.49 | 0.42 | 0.69 | 100.0 | 10.0 | 15.0 |
sec | 2002_07 | dssp | 1kq1:H | 68.2 | 71 | 71 | 54 | 78 | 89 | 58 | 74.7 | 78 | 62 | 93 | 10.6 | 0.30 | 0.31 | 0.30 | 0.63 | 0.41 | 0.58 | 100.0 | 0.00 | 15.0 |
sec | 2002_07 | dssp | 1l3l:A | 76.0 | 81 | 83 | 58 | 100 | 75 | 61 | 75.0 | 81 | 75 | 65 | 0.0 | 0.40 | 0.40 | 0.42 | 0.64 | 0.73 | 0.49 | 100.0 | 1.0 | 6.0 |
sec | 2002_07 | dssp | 1lj2:B | 79.1 | 80 | 97 | 33 | 100 | 88 | 41 | 56.8 | 54 | 50 | 82 | 0.0 | 0.34 | 0.37 | 0.33 | 0.61 | 0.56 | 0.50 | 0.0 | 13.0 | 3.0 |
sec | 2002_07 | dssp | 1ljo:A | 70.7 | 60 | 100 | 69 | 85 | 78 | 51 | 72.7 | 70 | 70 | 79 | 0.0 | 0.34 | 0.33 | 0.35 | 0.75 | 0.53 | 0.42 | 100.0 | 5.0 | 10.0 |
sec | 2002_07 | dssp | 1lm5:B | 75.1 | 85 | 73 | 50 | 62 | 73 | 80 | 74.8 | 93 | 47 | 66 | 6.7 | 0.30 | 0.29 | 0.31 | 0.62 | 0.48 | 0.62 | 100.0 | 6.0 | 3.0 |
sec | 2002_07 | dssp | 1lqr:A | 71.4 | 0 | 0 | 20 | 20 | 80 | 85 | 70.7 | 100 | 20 | 79 | 0.0 | 0.02 | 0.03 | 0.02 | 1.0 | 0.06 | 0.00 | 100.0 | 5.0 | 0.00 |
sec | 2002_07 | dssp | 1lsh:B | 60.9 | 43 | 23 | 54 | 87 | 76 | 63 | 64.7 | 52 | 59 | 77 | 14.3 | 0.18 | 0.19 | 0.17 | 0.16 | 0.49 | 0.49 | 100.0 | 11.0 | 18.0 |
sec | 2002_07 | dssp | 1lvf:A | 62.3 | 56 | 98 | 0 | 0 | 93 | 34 | 51.9 | 49 | 100 | 75 | 9.4 | 0.19 | 0.26 | 0.12 | 0.36 | 1.0 | 0.44 | 0.0 | 35.0 | 9.0 |
sec | 2002_07 | dssp | 1ly1:A | 73.7 | 71 | 87 | 85 | 62 | 72 | 62 | 81.0 | 83 | 95 | 71 | 2.6 | 0.33 | 0.34 | 0.32 | 0.60 | 0.68 | 0.49 | 100.0 | 9.0 | 4.0 |
sec | 2002_07 | dssp | 1m4v:A | 54.9 | 21 | 33 | 58 | 72 | 66 | 45 | 48.6 | 23 | 48 | 62 | 7.3 | 0.08 | 0.09 | 0.09 | 0.15 | 0.37 | 0.25 | 100.0 | 6.0 | 9.0 |
sec | 2002_07 | dssp | 1m62:A | 89.7 | 90 | 96 | 0 | 0 | 88 | 81 | 82.1 | 82 | 100 | 79 | 1.1 | 0.51 | 0.56 | 0.47 | 0.79 | 1.0 | 0.78 | 100.0 | 4.0 | 2.0 |
sec | 2002_07 | dssp | THIS_month:psum | 71.1 | 58 | 65 | 43 | 60 | 78 | 64 | 67.3 | 69.3 | 67.4 | 69.3 | 4.3 | 0.27 | 0.28 | 0.27 | 0.55 | 0.60 | 0.48 | 80 | 7.4 | 7.4 |
sec | 2002_07 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_07 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |