METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2001_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_06 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_06 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_06 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2001_06 | dssp | THIS_month:psum | 60.7 | 59 | 65 | 16 | 34 | 66 | 56 | 48.5 | 44.4 | 65.5 | 53.1 | 9.9 | 0.17 | 0.19 | 0.15 | 0.38 | 0.65 | 0.36 | 60 | 14.4 | 16.6 |
sec | 2001_06 | dssp | 1f7l:A | 61.9 | 91 | 65 | 34 | 87 | 53 | 44 | 40.8 | 45 | 30 | 47 | 9.3 | 0.23 | 0.22 | 0.25 | 0.58 | 0.43 | 0.28 | 0.0 | 16.0 | 21.0 |
sec | 2001_06 | dssp | 1f7t:A | 61.3 | 85 | 60 | 39 | 93 | 51 | 48 | 41.4 | 43 | 36 | 44 | 10.0 | 0.20 | 0.19 | 0.22 | 0.46 | 0.52 | 0.30 | 0.0 | 16.0 | 18.0 |
sec | 2001_06 | dssp | 1h9e:A | 71.4 | 41 | 63 | 0 | 0 | 84 | 84 | 49.5 | 38 | 100 | 53 | 7.1 | 0.16 | 0.19 | 0.14 | 0.35 | 1.0 | 0.49 | 100.0 | 10.0 | 10.0 |
sec | 2001_06 | dssp | 1h9f:A | 71.9 | 80 | 60 | 0 | 0 | 69 | 96 | 66.3 | 58 | 100 | 68 | 3.5 | 0.26 | 0.33 | 0.20 | 0.56 | 1.0 | 0.55 | 100.0 | 8.0 | 12.0 |
sec | 2001_06 | dssp | 1hf9:A | 70.7 | 68 | 100 | 0 | 0 | 83 | 33 | 85.9 | 100 | 100 | 36 | 2.4 | 0.26 | 0.36 | 0.18 | 0.49 | 1.0 | 0.40 | 100.0 | 26.0 | 4.0 |
sec | 2001_06 | dssp | 1hh0:A | 84.8 | 88 | 93 | 0 | 0 | 72 | 66 | 45.5 | 44 | 100 | 50 | 0.0 | 0.36 | 0.40 | 0.33 | 0.66 | 1.0 | 0.59 | 100.0 | 4.0 | 2.0 |
sec | 2001_06 | dssp | 1hs6:A | 50.0 | 48 | 59 | 30 | 42 | 65 | 45 | 44.0 | 41 | 27 | 62 | 11.9 | 0.05 | 0.05 | 0.05 | 0.24 | 0.20 | 0.24 | 0.0 | 7.0 | 6.0 |
sec | 2001_06 | dssp | 1iij:A | 37.1 | 36 | 90 | 0 | 0 | 40 | 50 | 29.4 | 25 | 100 | 50 | 34.2 | 0.06 | 0.09 | 0.05 | 0.26 | 1.0 | 0.25 | 100.0 | 42.0 | 48.0 |
sec | 2001_06 | dssp | 1im3:D | 40.0 | 0 | 0 | 23 | 77 | 75 | 39 | 33.0 | 0 | 20 | 69 | 12.6 | 0.03 | 0.04 | 0.03 | -0.08 | 0.14 | 0.16 | 0.0 | 13.0 | 44.0 |
sec | 2001_06 | dssp | 1j79:A | 58.6 | 55 | 60 | 37 | 42 | 69 | 62 | 50.0 | 50 | 42 | 52 | 8.7 | 0.09 | 0.09 | 0.09 | 0.33 | 0.28 | 0.34 | 100.0 | 2.0 | 1.0 |
sec | 2001_06 | dssp | THIS_month:psum | 60.7 | 59 | 65 | 16 | 34 | 66 | 56 | 48.5 | 44.4 | 65.5 | 53.1 | 9.9 | 0.17 | 0.19 | 0.15 | 0.38 | 0.65 | 0.36 | 60 | 14.4 | 16.6 |
sec | 2001_06 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2001_06 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2001_06 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |