METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp |
METHOD url: | APSSP |
TYPE : | sec |
NPROT : | 1312 |
NWEEKS : | 70 |
NOTE 1 : | here ALL results obtained for APSSP in month 2002_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_02 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_02 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
sec | 2002_02 | dssp | THIS_month:psum | 67.1 | 54 | 57 | 33 | 46 | 77 | 65 | 61.1 | 54.9 | 62.8 | 63.1 | 4.0 | 0.24 | 0.23 | 0.24 | 0.54 | 0.53 | 0.39 | 86.2 | 10.7 | 9.1 |
sec | 2002_02 | dssp | 1eq1:A | 76.5 | 98 | 76 | 0 | 0 | 15 | 77 | 43.2 | 49 | 100 | 21 | 0.0 | 0.10 | 0.06 | 0.16 | 0.27 | 1.0 | 0.27 | 100.0 | 21.0 | 0.00 |
sec | 2002_02 | dssp | 1g9p:A | 68.9 | 0 | 0 | 0 | 0 | 93 | 72 | 36.4 | 0 | 0 | 45 | 0.0 | 0.04 | 0.02 | 0.08 | 1.0 | -0.10 | -0.13 | 100.0 | 6.0 | 15.0 |
sec | 2002_02 | dssp | 1h67:A | 75.9 | 76 | 86 | 0 | 0 | 74 | 67 | 85.1 | 87 | 100 | 81 | 1.8 | 0.21 | 0.24 | 0.19 | 0.54 | 1.0 | 0.53 | 100.0 | 7.0 | 3.0 |
sec | 2002_02 | dssp | 1i2v:A | 45.5 | 0 | 0 | 16 | 20 | 72 | 52 | 30.6 | 0 | 25 | 39 | 2.2 | 0.01 | 0.01 | 0.02 | 1.0 | -0.08 | -0.14 | 100.0 | 15.0 | 4.0 |
sec | 2002_02 | dssp | 1igq:D | 57.6 | 100 | 16 | 35 | 91 | 80 | 68 | 60.8 | 33 | 50 | 76 | 18.6 | 0.22 | 0.24 | 0.20 | 0.34 | 0.39 | 0.52 | 100.0 | 25.0 | 32.0 |
sec | 2002_02 | dssp | 1itp:A | 48.1 | 34 | 80 | 23 | 40 | 82 | 44 | 41.5 | 47 | 26 | 46 | 7.7 | 0.11 | 0.10 | 0.12 | 0.42 | 0.06 | 0.23 | 100.0 | 16.0 | 14.0 |
sec | 2002_02 | dssp | 1j7x:A | 76.8 | 80 | 81 | 65 | 78 | 79 | 72 | 76.6 | 79 | 73 | 75 | 1.3 | 0.38 | 0.38 | 0.39 | 0.69 | 0.65 | 0.56 | 100.0 | 0.00 | 3.0 |
sec | 2002_02 | dssp | 1jdq:A | 87.8 | 81 | 100 | 86 | 76 | 90 | 89 | 89.4 | 69 | 93 | 100 | 1.0 | 0.59 | 0.59 | 0.60 | 0.88 | 0.75 | 0.77 | 100.0 | 4.0 | 3.0 |
sec | 2002_02 | dssp | 1jeo:A | 85.9 | 88 | 93 | 91 | 78 | 79 | 78 | 86.1 | 94 | 91 | 71 | 0.0 | 0.56 | 0.57 | 0.56 | 0.80 | 0.82 | 0.68 | 100.0 | 2.0 | 2.0 |
sec | 2002_02 | dssp | 1jkz:A | 47.8 | 0 | 0 | 31 | 71 | 89 | 43 | 34.2 | 0 | 43 | 41 | 0.0 | 0.11 | 0.07 | 0.17 | 1.0 | 0.32 | 0.10 | 100.0 | 23.0 | 19.0 |
sec | 2002_02 | dssp | 1jmu:B | 62.0 | 72 | 72 | 41 | 38 | 60 | 62 | 55.6 | 54 | 43 | 62 | 5.6 | 0.17 | 0.17 | 0.17 | 0.53 | 0.27 | 0.33 | 100.0 | 0.00 | 1.0 |
sec | 2002_02 | dssp | 1jnr:B | 73.2 | 40 | 57 | 60 | 70 | 85 | 76 | 67.4 | 45 | 71 | 69 | 0.6 | 0.22 | 0.21 | 0.24 | 0.41 | 0.55 | 0.41 | 100.0 | 4.0 | 3.0 |
sec | 2002_02 | dssp | 1jrm:A | 62.5 | 35 | 68 | 59 | 52 | 80 | 65 | 57.9 | 41 | 69 | 60 | 6.7 | 0.18 | 0.17 | 0.20 | 0.36 | 0.42 | 0.39 | 100.0 | 14.0 | 2.0 |
sec | 2002_02 | dssp | 1jsb:A | 61.4 | 37 | 75 | 68 | 51 | 62 | 67 | 62.9 | 55 | 69 | 60 | 0.0 | 0.18 | 0.17 | 0.19 | 0.49 | 0.36 | 0.22 | 100.0 | 5.0 | 10.0 |
sec | 2002_02 | dssp | 1jw2:A | 76.4 | 77 | 90 | 0 | 0 | 75 | 69 | 80.2 | 87 | 100 | 68 | 4.1 | 0.25 | 0.29 | 0.21 | 0.57 | 1.0 | 0.57 | 0.0 | 9.0 | 6.0 |
sec | 2002_02 | dssp | 1jw3:A | 44.3 | 93 | 38 | 14 | 58 | 40 | 50 | 40.0 | 70 | 21 | 31 | 12.1 | 0.12 | 0.12 | 0.14 | 0.41 | 0.16 | 0.09 | 100.0 | 32.0 | 24.0 |
sec | 2002_02 | dssp | 1jy1:A | 59.3 | 49 | 54 | 34 | 64 | 78 | 60 | 51.7 | 49 | 37 | 61 | 6.7 | 0.10 | 0.10 | 0.12 | 0.33 | 0.35 | 0.34 | 100.0 | 2.0 | 11.0 |
sec | 2002_02 | dssp | 1jyg:A | 66.7 | 50 | 95 | 0 | 0 | 96 | 60 | 65.4 | 54 | 100 | 89 | 8.6 | 0.27 | 0.31 | 0.23 | 0.46 | 1.0 | 0.58 | 0.0 | 30.0 | 8.0 |
sec | 2002_02 | dssp | 1k0s:A | 68.2 | 92 | 31 | 66 | 82 | 64 | 81 | 71.5 | 100 | 64 | 72 | 7.2 | 0.27 | 0.29 | 0.25 | 0.47 | 0.58 | 0.51 | 100.0 | 17.0 | 7.0 |
sec | 2002_02 | dssp | 1k1f:A | 88.1 | 85 | 100 | 0 | 0 | 94 | 72 | 98.2 | 100 | 100 | 93 | 0.0 | 0.57 | 0.63 | 0.51 | 0.79 | 1.0 | 0.74 | 100.0 | 10.0 | 1.0 |
sec | 2002_02 | dssp | 1k28:D | 58.5 | 45 | 45 | 42 | 73 | 76 | 57 | 49.7 | 51 | 46 | 51 | 5.5 | 0.11 | 0.11 | 0.12 | 0.32 | 0.40 | 0.30 | 100.0 | 0.00 | 14.0 |
sec | 2002_02 | dssp | 1k6w:A | 70.9 | 75 | 69 | 55 | 81 | 75 | 68 | 69.9 | 76 | 55 | 73 | 4.9 | 0.27 | 0.26 | 0.28 | 0.55 | 0.59 | 0.51 | 0.0 | 3.0 | 7.0 |
sec | 2002_02 | dssp | 1kbh:A | 83.0 | 75 | 100 | 0 | 0 | 94 | 73 | 75.2 | 69 | 100 | 86 | 2.1 | 0.47 | 0.53 | 0.42 | 0.73 | 1.0 | 0.71 | 100.0 | 14.0 | 4.0 |
sec | 2002_02 | dssp | 1khc:A | 74.8 | 76 | 76 | 48 | 92 | 85 | 69 | 62.9 | 53 | 60 | 75 | 3.7 | 0.34 | 0.32 | 0.36 | 0.62 | 0.61 | 0.58 | 100.0 | 0.00 | 9.0 |
sec | 2002_02 | dssp | 1kps:B | 74.4 | 69 | 93 | 0 | 0 | 82 | 72 | 80.8 | 83 | 100 | 76 | 7.6 | 0.29 | 0.35 | 0.24 | 0.58 | 1.0 | 0.62 | 0.0 | 16.0 | 10.0 |
sec | 2002_02 | dssp | 1kq4:C | 54.5 | 0 | 0 | 61 | 100 | 90 | 41 | 51.3 | 0 | 92 | 44 | 0.0 | 0.37 | 0.29 | 0.47 | -0.10 | 0.70 | 0.28 | 100.0 | 24.0 | 15.0 |
sec | 2002_02 | dssp | 1kqi:A | 68.4 | 0 | 0 | 0 | 0 | 92 | 72 | 29.2 | 100 | 0 | 37 | 0.0 | 0.05 | 0.03 | 0.08 | 1.0 | -0.14 | -0.14 | 100.0 | 0.00 | 21.0 |
sec | 2002_02 | dssp | 1ktz:B | 72.6 | 0 | 0 | 60 | 82 | 87 | 73 | 74.5 | 0 | 72 | 80 | 4.7 | 0.24 | 0.24 | 0.24 | -0.04 | 0.52 | 0.55 | 100.0 | 2.0 | 12.0 |
sec | 2002_02 | dssp | 1kwh:A | 57.1 | 49 | 67 | 27 | 44 | 75 | 52 | 45.7 | 48 | 23 | 50 | 5.8 | 0.08 | 0.08 | 0.09 | 0.32 | 0.26 | 0.29 | 100.0 | 11.0 | 5.0 |
sec | 2002_02 | dssp | THIS_month:psum | 67.1 | 54 | 57 | 33 | 46 | 77 | 65 | 61.1 | 54.9 | 62.8 | 63.1 | 4.0 | 0.24 | 0.23 | 0.24 | 0.54 | 0.53 | 0.39 | 86.2 | 10.7 | 9.1 |
sec | 2002_02 | dssp | ALL_proteins:psum | 76.4 | 78 | 83 | 66 | 77 | 83 | 73 | 71.7 | 71.3 | 69.3 | 72.1 | 3.2 | 0.40 | 0.40 | 0.40 | 0.70 | 0.65 | 0.61 | 7957.3 | 6.7 | 5.9 |
sec | 2002_02 | dssp | ALL_proteins:sig | 13.3 | 31 | 33 | 34 | 37 | 13 | 14 | 17.4 | 27.5 | 27.7 | 17.1 | 4.7 | 0.23 | 0.23 | 0.23 | 0.26 | 0.27 | 0.21 | 7880.8 | 8.3 | 7.6 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.36 | 0.87 | 0.91 | 0.95 | 1 | 0.37 | 0.40 | 0.48 | 0.76 | 0.76 | 0.47 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 217.5 | 0.23 | 0.21 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |