METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 329 |
NWEEKS : | 86 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2003_12 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
sec | 2003_12 | dssp | THIS_month:psum | 79.7 | 66 | 61 | 44 | 50 | 69 | 76 | 77.1 | 82 | 73 | 66.8 | 3.4 | 0.41 | 0.42 | 0.41 | 0.72 | 0.70 | 0.60 | 88.2 | 7.3 | 9.4 |
sec | 2003_12 | dssp | 1izm:A | 81.2 | 96 | 82 | 0 | 0 | 53 | 88 | 71.5 | 84 | 100 | 53 | 0.0 | 0.34 | 0.34 | 0.34 | 0.64 | 1.0 | 0.58 | 100.0 | 11.0 | 2.0 |
sec | 2003_12 | dssp | 1j0w:A | 80.8 | 100 | 70 | 72 | 91 | 81 | 77 | 83.0 | 94 | 86 | 75 | 3.0 | 0.49 | 0.50 | 0.48 | 0.80 | 0.69 | 0.66 | 100.0 | 7.0 | 9.0 |
sec | 2003_12 | dssp | 1j27:A | 87.8 | 100 | 83 | 80 | 97 | 81 | 81 | 76.4 | 100 | 59 | 89 | 4.0 | 0.63 | 0.63 | 0.63 | 0.86 | 0.81 | 0.76 | 100.0 | 7.0 | 7.0 |
sec | 2003_12 | dssp | 1ocs:A | 87.9 | 94 | 95 | 67 | 90 | 92 | 80 | 94.8 | 100 | 86 | 94 | 0.0 | 0.64 | 0.63 | 0.66 | 0.91 | 0.73 | 0.76 | 0.0 | 0.00 | 5.0 |
sec | 2003_12 | dssp | 1pc0:A | 91.8 | 0 | 0 | 96 | 88 | 86 | 96 | 100.0 | 100 | 100 | 100 | 0.0 | 0.60 | 0.60 | 0.61 | 1.0 | 0.83 | 0.83 | 100.0 | 0.00 | 4.0 |
sec | 2003_12 | dssp | 1pd3:A | 85.2 | 100 | 84 | 0 | 0 | 20 | 100 | 85.2 | 100 | 100 | 20 | 0.0 | 0.27 | 0.14 | 0.41 | 0.41 | 1.0 | 0.41 | 100.0 | 14.0 | 0.00 |
sec | 2003_12 | dssp | 1pg6:A | 89.7 | 0 | 0 | 100 | 82 | 80 | 100 | 97.4 | 100 | 100 | 95 | 0.0 | 0.61 | 0.61 | 0.62 | 1.0 | 0.81 | 0.81 | 100.0 | 0.00 | 10.0 |
sec | 2003_12 | dssp | 1q3j:A | 86.1 | 0 | 0 | 37 | 100 | 100 | 84 | 71.8 | 100 | 37 | 81 | 0.0 | 0.37 | 0.26 | 0.49 | 1.0 | 0.56 | 0.56 | 100.0 | 0.00 | 13.0 |
sec | 2003_12 | dssp | 1q7s:A | 82.9 | 94 | 92 | 61 | 100 | 88 | 58 | 87.5 | 94 | 80 | 82 | 0.8 | 0.59 | 0.59 | 0.60 | 0.88 | 0.72 | 0.62 | 0.0 | 0.00 | 11.0 |
sec | 2003_12 | dssp | 1q90:L | 75.0 | 88 | 100 | 0 | 0 | 28 | 66 | 82.8 | 100 | 100 | 21 | 6.2 | 0.52 | 0.64 | 0.41 | 0.78 | 1.0 | 0.34 | 100.0 | 9.0 | 21.0 |
sec | 2003_12 | dssp | 1q90:M | 88.2 | 96 | 90 | 0 | 0 | 0 | 0 | 57.8 | 60 | 100 | 0 | 2.9 | 0.01 | 0.01 | 0.02 | -0.05 | 1.0 | 1.0 | 100.0 | 5.0 | 2.0 |
sec | 2003_12 | dssp | 1q90:N | 54.8 | 44 | 100 | 0 | 0 | 100 | 66 | 69.0 | 64 | 100 | 90 | 35.4 | 0.45 | 0.62 | 0.28 | 0.36 | 1.0 | 0.76 | 100.0 | 45.0 | 35.0 |
sec | 2003_12 | dssp | 1rf8:B | 76.0 | 78 | 80 | 0 | 0 | 76 | 91 | 58.5 | 62 | 0 | 57 | 3.0 | 0.33 | 0.39 | 0.28 | 0.69 | -0.03 | 0.57 | 100.0 | 1.0 | 12.0 |
sec | 2003_12 | dssp | 1rji:A | 64.5 | 0 | 0 | 25 | 20 | 82 | 73 | 45.0 | 0 | 8 | 59 | 0.0 | 0.04 | 0.04 | 0.06 | 1.0 | 0.09 | -0.05 | 100.0 | 12.0 | 3.0 |
sec | 2003_12 | dssp | 1roc:A | 73.5 | 46 | 41 | 70 | 88 | 83 | 69 | 71.3 | 36 | 76 | 72 | 3.8 | 0.29 | 0.29 | 0.29 | 0.37 | 0.63 | 0.55 | 100.0 | 1.0 | 9.0 |
sec | 2003_12 | dssp | 1rws:A | 66.2 | 100 | 46 | 75 | 30 | 61 | 94 | 78.4 | 100 | 41 | 81 | 0.0 | 0.28 | 0.35 | 0.22 | 0.63 | 0.36 | 0.37 | 100.0 | 10.0 | 17.0 |
sec | 2003_12 | dssp | 1usm:A | 84.4 | 100 | 90 | 80 | 77 | 69 | 81 | 80.6 | 100 | 68 | 68 | 0.0 | 0.61 | 0.61 | 0.62 | 0.92 | 0.71 | 0.64 | 100.0 | 3.0 | 1.0 |
sec | 2003_12 | dssp | THIS_month:psum | 79.7 | 66 | 61 | 44 | 50 | 69 | 76 | 77.1 | 82 | 73 | 66.8 | 3.4 | 0.41 | 0.42 | 0.41 | 0.72 | 0.70 | 0.60 | 88.2 | 7.3 | 9.4 |
sec | 2003_12 | dssp | ALL_proteins:psum | 75.4 | 84 | 78 | 63 | 74 | 74 | 73 | 71.4 | 76.7 | 73.0 | 66.6 | 2.7 | 0.35 | 0.36 | 0.35 | 0.69 | 0.61 | 0.54 | 8632.2 | 7.3 | 6.4 |
sec | 2003_12 | dssp | ALL_proteins:sig | 10.7 | 34 | 32 | 38 | 44 | 17 | 15 | 15.5 | 26.1 | 27.4 | 18.7 | 4.8 | 0.17 | 0.17 | 0.17 | 0.25 | 0.28 | 0.19 | 8558.9 | 7.7 | 7.1 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 0.59 | 1 | 1 | 2 | 2 | 0.97 | 0.84 | 0.85 | 1.4 | 1.5 | 1.0 | 0.26 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 471.8 | 0.42 | 0.39 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |