METHOD about: | ../../../doc/explain_methods.html#PX_about_sable |
METHOD url: | SABLE |
TYPE : | sec |
NPROT : | 87 |
NWEEKS : | 23 |
NOTE 1 : | here ALL results obtained for SABLE in month 2003_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2003_12 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2003_12 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
sec | 2003_12 | dssp | THIS_month:psum | 78.0 | 58 | 58 | 49 | 47 | 72 | 79 | 79.2 | 84.3 | 76.0 | 69.3 | 4.0 | 0.37 | 0.38 | 0.36 | 0.70 | 0.68 | 0.55 | 94.4 | 7.3 | 8.1 |
sec | 2003_12 | dssp | 1izm:A | 87.1 | 91 | 92 | 0 | 0 | 78 | 83 | 78.6 | 81 | 100 | 73 | 0.0 | 0.48 | 0.52 | 0.45 | 0.78 | 1.0 | 0.71 | 100.0 | 0.00 | 2.0 |
sec | 2003_12 | dssp | 1j0w:A | 81.8 | 94 | 66 | 72 | 96 | 86 | 78 | 87.6 | 92 | 86 | 86 | 4.0 | 0.49 | 0.51 | 0.49 | 0.74 | 0.74 | 0.70 | 100.0 | 7.0 | 11.0 |
sec | 2003_12 | dssp | 1j27:A | 89.8 | 94 | 86 | 95 | 97 | 72 | 80 | 94.6 | 100 | 100 | 76 | 0.0 | 0.69 | 0.69 | 0.70 | 0.84 | 0.93 | 0.69 | 100.0 | 3.0 | 1.0 |
sec | 2003_12 | dssp | 1ocs:A | 87.1 | 90 | 97 | 75 | 84 | 90 | 80 | 86.6 | 100 | 86 | 77 | 0.0 | 0.62 | 0.61 | 0.63 | 0.90 | 0.74 | 0.74 | 0.0 | 3.0 | 2.0 |
sec | 2003_12 | dssp | 1pc0:A | 85.2 | 0 | 0 | 96 | 79 | 72 | 95 | 96.7 | 100 | 100 | 93 | 0.0 | 0.44 | 0.43 | 0.46 | 1.0 | 0.72 | 0.72 | 100.0 | 0.00 | 11.0 |
sec | 2003_12 | dssp | 1pd3:A | 90.7 | 100 | 89 | 0 | 0 | 50 | 100 | 94.4 | 100 | 100 | 70 | 0.0 | 0.47 | 0.38 | 0.58 | 0.67 | 1.0 | 0.67 | 100.0 | 9.0 | 0.00 |
sec | 2003_12 | dssp | 1pg6:A | 87.2 | 0 | 0 | 89 | 85 | 85 | 89 | 97.4 | 100 | 100 | 95 | 0.0 | 0.45 | 0.45 | 0.45 | 1.0 | 0.74 | 0.74 | 100.0 | 0.00 | 2.0 |
sec | 2003_12 | dssp | 1q3j:A | 83.3 | 0 | 0 | 62 | 62 | 89 | 89 | 74.6 | 100 | 50 | 81 | 0.0 | 0.22 | 0.22 | 0.22 | 1.0 | 0.51 | 0.51 | 100.0 | 0.00 | 0.00 |
sec | 2003_12 | dssp | 1q7s:A | 82.9 | 87 | 100 | 69 | 92 | 92 | 57 | 79.2 | 94 | 58 | 87 | 0.0 | 0.60 | 0.61 | 0.60 | 0.88 | 0.73 | 0.62 | 100.0 | 5.0 | 7.0 |
sec | 2003_12 | dssp | 1q90:L | 71.9 | 88 | 78 | 0 | 0 | 14 | 100 | 81.2 | 100 | 100 | 14 | 9.3 | 0.14 | 0.13 | 0.16 | 0.02 | 1.0 | 0.33 | 100.0 | 9.0 | 9.0 |
sec | 2003_12 | dssp | 1q90:M | 73.5 | 77 | 92 | 0 | 0 | 33 | 25 | 92.6 | 100 | 100 | 16 | 11.7 | 0.05 | 0.08 | 0.04 | 0.07 | 1.0 | 0.20 | 100.0 | 14.0 | 11.0 |
sec | 2003_12 | dssp | 1q90:N | 54.8 | 44 | 100 | 0 | 0 | 100 | 54 | 69.0 | 64 | 100 | 90 | 29.0 | 0.36 | 0.50 | 0.23 | 0.36 | 1.0 | 0.66 | 100.0 | 45.0 | 29.0 |
sec | 2003_12 | dssp | 1r21:A | 78.0 | 0 | 0 | 78 | 75 | 77 | 80 | 77.7 | 100 | 85 | 72 | 0.0 | 0.23 | 0.24 | 0.24 | 1.0 | 0.55 | 0.55 | 100.0 | 0.00 | 1.0 |
sec | 2003_12 | dssp | 1rf8:B | 67.0 | 46 | 75 | 0 | 0 | 77 | 83 | 65.3 | 52 | 0 | 70 | 8.0 | 0.17 | 0.20 | 0.15 | 0.46 | -0.04 | 0.45 | 100.0 | 12.0 | 17.0 |
sec | 2003_12 | dssp | 1rji:A | 64.5 | 0 | 0 | 0 | 0 | 86 | 74 | 33.3 | 0 | 0 | 44 | 3.2 | 0.04 | 0.03 | 0.06 | 1.0 | -0.14 | -0.00 | 100.0 | 12.0 | 0.00 |
sec | 2003_12 | dssp | 1roc:A | 71.0 | 40 | 26 | 69 | 85 | 80 | 73 | 76.0 | 35 | 80 | 79 | 8.3 | 0.24 | 0.26 | 0.24 | 0.23 | 0.59 | 0.58 | 100.0 | 5.0 | 9.0 |
sec | 2003_12 | dssp | 1rws:A | 63.2 | 100 | 66 | 100 | 26 | 53 | 100 | 61.9 | 100 | 58 | 59 | 0.0 | 0.39 | 0.48 | 0.31 | 0.79 | 0.41 | 0.43 | 100.0 | 4.0 | 32.0 |
sec | 2003_12 | dssp | 1usm:A | 85.7 | 100 | 88 | 90 | 79 | 65 | 89 | 79.5 | 100 | 66 | 66 | 0.0 | 0.63 | 0.63 | 0.64 | 0.89 | 0.78 | 0.67 | 100.0 | 5.0 | 3.0 |
sec | 2003_12 | dssp | THIS_month:psum | 78.0 | 58 | 58 | 49 | 47 | 72 | 79 | 79.2 | 84.3 | 76.0 | 69.3 | 4.0 | 0.37 | 0.38 | 0.36 | 0.70 | 0.68 | 0.55 | 94.4 | 7.3 | 8.1 |
sec | 2003_12 | dssp | ALL_proteins:psum | 75.8 | 81 | 84 | 67 | 62 | 75 | 74 | 75.4 | 83.3 | 74.1 | 66.8 | 4.0 | 0.36 | 0.37 | 0.35 | 0.70 | 0.57 | 0.58 | 8735.6 | 8.7 | 6.9 |
sec | 2003_12 | dssp | ALL_proteins:sig | 12.4 | 33 | 34 | 48 | 45 | 20 | 19 | 16.5 | 22.9 | 31.3 | 22.0 | 5.7 | 0.21 | 0.22 | 0.20 | 0.27 | 0.35 | 0.21 | 8698.4 | 8.4 | 7.7 |
sec | 2003_12 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 5 | 4 | 2 | 2 | 1.7 | 2.4 | 3.3 | 2.3 | 0.61 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.02 | 932.5 | 0.91 | 0.82 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |